Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACMX8W_RS15260 Genome accession   NZ_CP180439
Coordinates   2878389..2879084 (-) Length   231 a.a.
NCBI ID   WP_015384272.1    Uniprot ID   -
Organism   Bacillus subtilis strain Z-294     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2873389..2884084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX8W_RS15235 (ACMX8W_15235) minD 2874325..2875131 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  ACMX8W_RS15240 (ACMX8W_15240) minC 2875133..2875813 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  ACMX8W_RS15245 (ACMX8W_15245) mreD 2875866..2876384 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  ACMX8W_RS15250 (ACMX8W_15250) mreC 2876381..2877253 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ACMX8W_RS15255 (ACMX8W_15255) mreB 2877284..2878297 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ACMX8W_RS15260 (ACMX8W_15260) ysxA/radC 2878389..2879084 (-) 696 WP_015384272.1 RadC family protein Machinery gene
  ACMX8W_RS15265 (ACMX8W_15265) maf 2879121..2879690 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ACMX8W_RS15270 (ACMX8W_15270) spoIIB 2879843..2880841 (-) 999 WP_047182972.1 stage II sporulation protein SpoIIB -
  ACMX8W_RS15275 (ACMX8W_15275) comC 2880975..2881721 (-) 747 WP_080344219.1 prepilin peptidase Machinery gene
  ACMX8W_RS15280 (ACMX8W_15280) folC 2881861..2883153 (-) 1293 WP_015384275.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26142.47 Da        Isoelectric Point: 7.9285

>NTDB_id=974898 ACMX8W_RS15260 WP_015384272.1 2878389..2879084(-) (ysxA/radC) [Bacillus subtilis strain Z-294]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTIFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=974898 ACMX8W_RS15260 WP_015384272.1 2878389..2879084(-) (ysxA/radC) [Bacillus subtilis strain Z-294]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTTCTGAAAGTCGG
AGCCGAGAACTTAGCGAACCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGATGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCATATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATTTGTGTTCATAATCATCCTTCTGGAGATCC
GACACCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.134

100

0.991
  radC Streptococcus pneumoniae TIGR4

48.571

90.909

0.442
  radC Streptococcus pneumoniae R6

48.095

90.909

0.437
  radC Streptococcus pneumoniae D39

48.095

90.909

0.437
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429