Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   ACMX77_RS05845 Genome accession   NZ_CP180438
Coordinates   1131906..1135298 (+) Length   1130 a.a.
NCBI ID   WP_047182393.1    Uniprot ID   -
Organism   Bacillus subtilis strain W-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1126906..1140298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX77_RS05835 (ACMX77_05835) addA 1126964..1130662 (+) 3699 WP_047182391.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ACMX77_RS05840 (ACMX77_05840) sbcD 1130734..1131909 (+) 1176 WP_047182392.1 exonuclease subunit SbcD -
  ACMX77_RS05845 (ACMX77_05845) sbcC 1131906..1135298 (+) 3393 WP_047182393.1 exonuclease subunit SbcC Machinery gene
  ACMX77_RS05850 (ACMX77_05850) hlpB 1135312..1135614 (+) 303 WP_047182394.1 HNH nuclease-like protein HlpB -
  ACMX77_RS05855 (ACMX77_05855) gerPF 1135651..1135869 (-) 219 WP_003233096.1 spore germination protein -
  ACMX77_RS05860 (ACMX77_05860) gerPE 1135901..1136302 (-) 402 WP_046340225.1 spore germination protein GerPE -
  ACMX77_RS05865 (ACMX77_05865) gerPD 1136302..1136478 (-) 177 WP_014476380.1 spore germination protein GerPD -
  ACMX77_RS05870 (ACMX77_05870) gerPC 1136475..1137092 (-) 618 WP_014476381.1 spore germination protein GerPC -
  ACMX77_RS05875 (ACMX77_05875) gerPB 1137116..1137349 (-) 234 WP_015483061.1 spore germination protein GerPB -
  ACMX77_RS05880 (ACMX77_05880) gerPA 1137364..1137585 (-) 222 WP_003233088.1 spore germination protein -
  ACMX77_RS05885 (ACMX77_05885) yisI 1138007..1138177 (-) 171 WP_003233086.1 aspartyl-phosphate phosphatase YisI -
  ACMX77_RS05890 (ACMX77_05890) yisJ 1138323..1139246 (-) 924 WP_015383296.1 CotH kinase family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128825.43 Da        Isoelectric Point: 5.3551

>NTDB_id=974679 ACMX77_RS05845 WP_047182393.1 1131906..1135298(+) (sbcC) [Bacillus subtilis strain W-2]
MKPIALSIKGLHSFREEQTIDFEGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNQAEDTLSVSFTF
ALQTNHQISYKVERVFKRTDEMKVKTALCRFIEIKDEHTVLADKASEVNKRVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRQAQEANARKNEMLAEQSGLGEASSEAVKQAEKALEQAEARLEAMRKNRDQAK
ERFTEHQEIWNVQKEKSAYEEEEKRLAEEQPHIDSMQKRLLEAETAAALKPYADRYAEAIQHEEQAEKEQTLAQKDLADR
TAFFQQKHEEYEAWRQHKSEKEPELLTKQEQLSRLQDIEIKLSEAKQEEERKKADLRQKEEALQSVMNELETVTDRLTRG
QNRQTELKQQLKSLQVTSDERKSCQQAAEMALRIRQTEEQIKKEKKRSDELNLVLQKINEEKNTLVQKTEAEENNIIRAY
EAVQTVYHLVCETERSLTRMTEEARKSQHTLHLQREKARVALLTKELAQKLTAGKPCPVCGSTDHDPSASVHETYEADSH
LEEDIKRTDVLLTEAAALSQEILSAKITLEEQSARFIEQCPFLQTIQAQNLEAAASFENQPVYEAFETAKFEWKRIKQDI
LSVKTRMAQMIGAYQESLKKAEQLNEKIGFEKREADRIESIISELQSSMDGSLNMFKEAFQNQSVDEAEKWQQAIEEKDR
AAEECEKRIEKSIAFLAEHEAQKEKLRESGHRLEREKLELHYAAERIKSVIADYEHELGDYAKGDSIQIKLRSVQQDLKL
LKEKEQSLYEELQSAQMKLNQAKSRASASELTLQEAKGRLEKAKAAWLEHTKNTSITRTEEVEQSLIPADELEKMKTGID
QFMDKMKQNAANLKRVAEILAGRALSESEWNETVAALQEAEDAFGIAIEEKGAAAKALAVIREHHKRFNEIEAELKKWQT
HIDRLDKLQAVFKGNTFVEFLAEEQLESVARDASARLSMLTRQRYAIEVDSEGGFVMRDDANGGVRRPVSSLSGGETFLT
SLSLALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLAVGVISHVQELRARLPKKLIVHPAEPSG
RGTRVSLELM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=974679 ACMX77_RS05845 WP_047182393.1 1131906..1135298(+) (sbcC) [Bacillus subtilis strain W-2]
ATGAAGCCGATCGCTTTAAGCATTAAGGGGCTCCATAGCTTTAGAGAGGAGCAGACGATAGATTTTGAAGGCCTTTCCGG
TGCCGGTGTTTTCGGCATTTTCGGCCCGACAGGAAGCGGTAAATCCTCTATTCTCGACGCAATGACGCTTGCTTTATACG
GAAAGGTGGAACGGGCGGCGAATAATACGCACGGTATCTTAAACCAGGCGGAAGATACGCTGTCTGTTTCCTTTACCTTT
GCGCTTCAGACGAATCACCAAATCTCATACAAAGTCGAGCGTGTGTTTAAGAGAACGGATGAAATGAAGGTGAAAACGGC
ACTTTGCCGCTTCATCGAAATCAAGGATGAGCATACGGTGCTGGCTGATAAAGCCAGCGAAGTGAATAAAAGAGTTGAGG
AGCTCTTAGGGCTGACGATCGACGATTTTACGAGAGCGGTGGTGCTGCCCCAAGGGAAATTTGCTGAATTTCTGTCTTTA
AAAGGGGCAGAGCGCAGGCATATGCTTCAGCGTTTATTTAATTTGGAGCAATATGGAGACAGGCTTGTGAAAAAGCTGAG
ACGGCAGGCGCAGGAAGCCAATGCGAGAAAAAATGAAATGCTTGCTGAACAGTCCGGTCTCGGTGAGGCGAGTTCAGAGG
CAGTTAAGCAGGCTGAAAAGGCTCTCGAACAAGCTGAAGCCCGGCTGGAAGCGATGAGGAAGAACCGTGATCAGGCGAAG
GAGCGGTTTACAGAGCATCAGGAGATATGGAATGTCCAAAAGGAAAAATCCGCTTATGAAGAAGAGGAAAAACGTCTCGC
AGAAGAACAGCCGCATATAGACAGTATGCAAAAACGCCTGCTGGAAGCAGAAACAGCAGCAGCCCTTAAGCCCTATGCGG
ACCGGTACGCAGAAGCGATCCAGCATGAGGAGCAAGCTGAAAAGGAACAAACGCTAGCCCAAAAGGATTTAGCGGACCGG
ACAGCTTTCTTTCAGCAAAAACATGAAGAGTATGAAGCGTGGCGCCAGCATAAAAGCGAGAAAGAGCCTGAGCTTTTAAC
CAAACAGGAACAGCTTTCCCGCTTGCAGGACATCGAAATCAAACTGAGTGAGGCCAAGCAAGAGGAAGAGCGCAAAAAGG
CTGACCTCCGGCAGAAAGAAGAGGCTCTTCAATCTGTCATGAATGAATTAGAGACCGTAACAGACCGCCTGACACGAGGG
CAAAACAGACAGACAGAATTGAAACAGCAGCTCAAATCCCTGCAGGTGACATCCGATGAGCGAAAAAGCTGCCAGCAGGC
CGCAGAAATGGCATTGCGCATCAGACAAACCGAGGAACAAATCAAAAAAGAGAAAAAACGAAGTGACGAATTGAACCTCG
TGCTTCAGAAGATAAATGAAGAGAAGAATACACTCGTTCAAAAGACGGAAGCAGAAGAAAACAACATCATTCGGGCATAT
GAGGCTGTACAAACTGTGTACCATTTGGTGTGCGAAACGGAACGCTCATTAACACGTATGACGGAAGAGGCTAGAAAGAG
TCAACACACGCTTCATTTACAGCGTGAAAAAGCAAGGGTGGCACTGCTGACAAAAGAGTTAGCCCAAAAGCTGACTGCCG
GAAAGCCTTGCCCGGTATGCGGTTCAACCGATCATGATCCATCTGCCTCAGTACATGAAACATATGAAGCCGACAGCCAT
CTTGAAGAGGACATCAAACGGACAGATGTGTTATTGACGGAAGCTGCTGCTCTCAGCCAGGAGATTCTTTCAGCCAAAAT
TACGCTTGAAGAACAGTCCGCGCGCTTTATTGAACAGTGCCCGTTTTTGCAGACAATTCAAGCGCAGAACCTTGAAGCGG
CAGCTTCCTTCGAAAATCAGCCGGTGTATGAAGCATTTGAAACTGCCAAATTTGAATGGAAACGAATCAAGCAGGACATT
CTTTCTGTTAAGACACGAATGGCACAAATGATTGGCGCCTATCAGGAGTCTTTAAAAAAGGCCGAGCAGCTTAATGAAAA
AATCGGTTTTGAAAAAAGAGAAGCTGACCGTATTGAAAGCATCATCAGCGAGCTTCAATCCTCAATGGACGGCAGTCTGA
ACATGTTTAAAGAAGCATTTCAGAATCAATCTGTGGACGAAGCAGAAAAATGGCAGCAAGCCATTGAAGAAAAGGACCGG
GCTGCAGAAGAATGTGAAAAACGAATTGAGAAGAGTATCGCGTTTCTTGCTGAGCATGAAGCACAAAAGGAAAAACTGCG
GGAATCTGGACACCGGCTTGAACGGGAAAAGCTGGAGCTTCATTATGCGGCTGAACGCATCAAGAGCGTGATAGCTGATT
ATGAGCACGAACTCGGAGATTATGCAAAAGGAGATTCGATTCAAATCAAACTCCGCTCTGTCCAGCAGGATCTAAAGCTG
TTAAAGGAAAAAGAACAATCTTTATATGAAGAACTGCAAAGCGCCCAAATGAAGCTCAACCAGGCGAAAAGCCGCGCTTC
TGCAAGCGAGCTCACTCTTCAAGAGGCGAAGGGCAGATTGGAAAAAGCAAAAGCTGCTTGGCTTGAGCATACAAAAAACA
CCTCCATTACCCGGACTGAGGAGGTTGAACAAAGTCTCATCCCAGCTGATGAACTTGAAAAGATGAAAACCGGCATAGAC
CAGTTTATGGATAAAATGAAGCAAAATGCTGCAAACTTAAAACGAGTAGCAGAGATACTTGCCGGCAGAGCATTATCAGA
GAGCGAATGGAACGAAACCGTTGCAGCATTACAAGAAGCTGAGGACGCATTTGGCATTGCTATAGAGGAAAAAGGCGCGG
CAGCAAAAGCACTGGCTGTCATTCGCGAACATCATAAACGGTTTAATGAAATTGAAGCTGAACTGAAAAAATGGCAGACG
CATATCGACAGGCTGGACAAGCTGCAAGCTGTGTTTAAAGGCAATACCTTCGTCGAATTTTTAGCTGAGGAGCAGCTTGA
AAGCGTTGCGAGGGACGCCTCAGCAAGACTCAGTATGCTGACAAGACAGCGCTATGCCATCGAAGTAGATTCAGAAGGCG
GCTTCGTGATGCGGGATGACGCGAATGGAGGCGTAAGACGCCCGGTTTCCAGTTTGTCTGGAGGAGAGACCTTCCTCACC
TCGCTTTCACTTGCTCTTGCGCTGTCTGCGCAGATCCAGCTTCGCGGGGAATACCCGCTTCAGTTCTTTTTCTTAGATGA
AGGCTTCGGCACACTGGATCAAGATCTGCTTGATACGGTTGTAACGGCCTTGGAAAAACTTCAGTCAGACAATCTGGCTG
TCGGTGTCATCAGCCATGTGCAGGAACTGCGTGCACGGCTTCCGAAAAAGCTGATCGTCCATCCGGCTGAACCGAGCGGC
CGCGGTACGCGGGTATCACTTGAGTTGATGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(6-253)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

98.584

100

0.986