Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   ACK8DD_RS03015 Genome accession   NZ_CP179880
Coordinates   623732..624247 (-) Length   171 a.a.
NCBI ID   WP_004745974.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain MRSN548254     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 618732..629247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DD_RS02990 (ACK8DD_02990) - 619279..620922 (+) 1644 WP_000281761.1 nitrite/sulfite reductase -
  ACK8DD_RS02995 (ACK8DD_02995) - 620915..621400 (+) 486 WP_000935247.1 DUF934 domain-containing protein -
  ACK8DD_RS03000 (ACK8DD_03000) - 621483..621836 (+) 354 WP_000457783.1 DMT family transporter -
  ACK8DD_RS03005 (ACK8DD_03005) - 621879..622322 (-) 444 WP_032008148.1 VOC family protein -
  ACK8DD_RS03010 (ACK8DD_03010) - 622448..623623 (-) 1176 WP_004745972.1 thiolase family protein -
  ACK8DD_RS03015 (ACK8DD_03015) fimT 623732..624247 (-) 516 WP_004745974.1 GspH/FimT family pseudopilin Machinery gene
  ACK8DD_RS03020 (ACK8DD_03020) omp38 624629..625699 (+) 1071 WP_004745975.1 outer membrane protein Omp38 -
  ACK8DD_RS03025 (ACK8DD_03025) - 625824..625967 (-) 144 WP_162138624.1 hypothetical protein -
  ACK8DD_RS03030 (ACK8DD_03030) - 625986..627191 (-) 1206 WP_004745978.1 RtcB family protein -
  ACK8DD_RS03035 (ACK8DD_03035) - 627468..628928 (-) 1461 WP_002133917.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19620.88 Da        Isoelectric Point: 8.8196

>NTDB_id=974340 ACK8DD_RS03015 WP_004745974.1 623732..624247(-) (fimT) [Acinetobacter baumannii strain MRSN548254]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRLISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=974340 ACK8DD_RS03015 WP_004745974.1 623732..624247(-) (fimT) [Acinetobacter baumannii strain MRSN548254]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGCCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCTTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGTCATGTACGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

44.578

97.076

0.433

Multiple sequence alignment