Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AABM56_RS19820 Genome accession   NZ_CP150916
Coordinates   4278246..4279310 (-) Length   354 a.a.
NCBI ID   WP_133861494.1    Uniprot ID   -
Organism   Pseudomonas aestiva strain DGS32     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4273246..4284310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM56_RS19795 aroK 4273710..4274228 (-) 519 WP_133861489.1 shikimate kinase AroK -
  AABM56_RS19800 pilQ 4274234..4276489 (-) 2256 WP_263259283.1 type IV pilus secretin PilQ Machinery gene
  AABM56_RS19805 - 4276490..4277008 (-) 519 WP_133861491.1 pilus assembly protein PilP -
  AABM56_RS19810 pilO 4277005..4277658 (-) 654 WP_133861492.1 type 4a pilus biogenesis protein PilO -
  AABM56_RS19815 - 4277655..4278245 (-) 591 WP_133861493.1 PilN domain-containing protein -
  AABM56_RS19820 comM 4278246..4279310 (-) 1065 WP_133861494.1 pilus assembly protein PilM Machinery gene
  AABM56_RS19825 - 4279478..4281898 (+) 2421 WP_133861495.1 penicillin-binding protein 1A -
  AABM56_RS19830 - 4281953..4283221 (-) 1269 WP_133861496.1 malic enzyme-like NAD(P)-binding protein -
  AABM56_RS19835 - 4283334..4284161 (-) 828 WP_133861497.1 thermonuclease family protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37797.17 Da        Isoelectric Point: 4.6278

>NTDB_id=973735 AABM56_RS19820 WP_133861494.1 4278246..4279310(-) (comM) [Pseudomonas aestiva strain DGS32]
MLGLFRKKANTLLGIDVSSTSVKLIELSRSGGRYRVEAYAVEPLPANAVVEKNIAELEGVGLAIGRVLVKARSSARSAAV
AVSGSAVIAKTIEMDAGLTDDELENQIKLEADQYIPYPLDEVAIDFEVQGPSPRNAERVEVLLAACRKENVEVREAALAL
AGVAAKVVDVEAYALERAYQLLANQLGGHVDDLTVAVVDIGATMTTLSVLHNGKTIYTREQLFGGRQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYQSEVLTPFREAVVQQVARSLQFFFAAGQYNDVDYILLAGGTASISGLDRLIQQKIGTPTVLANP
FADMTVSNKVNAAALAGDAPALMIACGLAMRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=973735 AABM56_RS19820 WP_133861494.1 4278246..4279310(-) (comM) [Pseudomonas aestiva strain DGS32]
GTGCTAGGGCTATTCAGAAAGAAGGCGAATACGCTGCTGGGTATCGACGTCAGTTCGACATCCGTGAAACTCATCGAGTT
GAGCCGTTCAGGCGGACGCTACCGGGTGGAGGCCTATGCGGTCGAGCCCCTGCCGGCCAATGCCGTGGTGGAAAAGAACA
TCGCCGAACTCGAAGGCGTGGGCCTGGCCATCGGCCGGGTGCTGGTCAAGGCGCGCAGCTCCGCGCGCAGCGCTGCGGTG
GCCGTCTCCGGCTCGGCGGTGATCGCCAAGACCATCGAGATGGATGCCGGCCTGACCGACGACGAGCTGGAAAACCAGAT
CAAGCTGGAAGCCGACCAGTACATTCCCTATCCGCTGGACGAGGTCGCCATCGACTTCGAGGTGCAGGGGCCGTCGCCGC
GCAACGCCGAGCGCGTCGAGGTGCTGCTGGCCGCCTGCCGGAAGGAAAACGTCGAGGTTCGCGAGGCGGCCCTGGCGCTG
GCCGGCGTCGCGGCCAAGGTAGTCGACGTCGAGGCCTATGCCCTGGAGCGCGCCTACCAGTTGCTGGCCAATCAGCTTGG
CGGCCATGTCGACGACCTGACCGTGGCGGTGGTCGACATCGGCGCCACCATGACCACCCTGAGCGTGCTGCACAACGGCA
AGACCATCTATACCCGCGAGCAGCTGTTCGGCGGTCGTCAGCTCACCGAAGAGATTCAGCGCCGCTACGGCCTCTCGGTA
GAGGAGGCCGGTCTGGCCAAGAAGCAGGGCGGATTGCCGGACGACTACCAGAGCGAGGTGCTGACGCCCTTCCGCGAGGC
CGTGGTGCAGCAGGTGGCGCGTTCGCTGCAGTTCTTTTTCGCCGCCGGGCAATACAATGATGTGGACTACATCTTGCTTG
CTGGAGGAACCGCGTCAATTTCCGGACTCGACCGCTTGATCCAGCAGAAAATCGGCACCCCCACGGTCTTGGCCAATCCC
TTCGCCGACATGACCGTCAGCAACAAGGTCAATGCGGCAGCCCTGGCAGGTGACGCCCCGGCGCTGATGATCGCCTGCGG
CCTGGCCATGAGGAGTTTCGACTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.78

100

0.568
  pilM Acinetobacter baumannii D1279779

56.78

100

0.568
  comM Acinetobacter baylyi ADP1

55.367

100

0.554
  pilM Legionella pneumophila strain ERS1305867

44.915

100

0.449

Multiple sequence alignment