Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACL6EQ_RS05220 Genome accession   NZ_CP178716
Coordinates   1026527..1027444 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain SY1483     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1021527..1032444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS05205 (ACL6EQ_05205) trpS 1022107..1023099 (-) 993 WP_015483084.1 tryptophan--tRNA ligase -
  ACL6EQ_RS05210 (ACL6EQ_05210) oppA 1023843..1025480 (+) 1638 WP_305090542.1 oligopeptide ABC transporter substrate-binding protein OppA -
  ACL6EQ_RS05215 (ACL6EQ_05215) oppB 1025588..1026523 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  ACL6EQ_RS05220 (ACL6EQ_05220) amiD 1026527..1027444 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  ACL6EQ_RS05225 (ACL6EQ_05225) oppD 1027449..1028525 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  ACL6EQ_RS05230 (ACL6EQ_05230) oppF 1028527..1029444 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  ACL6EQ_RS05235 (ACL6EQ_05235) yjbB 1029550..1030767 (+) 1218 WP_153255904.1 MFS transporter -
  ACL6EQ_RS05240 (ACL6EQ_05240) yjbC 1030931..1031509 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  ACL6EQ_RS05245 (ACL6EQ_05245) spx 1031690..1032085 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=972813 ACL6EQ_RS05220 WP_003232954.1 1026527..1027444(+) (amiD) [Bacillus subtilis strain SY1483]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=972813 ACL6EQ_RS05220 WP_003232954.1 1026527..1027444(+) (amiD) [Bacillus subtilis strain SY1483]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACGGACGAAATCATGATGCGTATCGCTGACATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGGCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAATATGGCCAGAATCGTGCGTGG
ACAAGTGCTGCAGCTGAAGAATCAAGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTGCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment