Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   WNC56_RS07075 Genome accession   NZ_CP150833
Coordinates   1407091..1407552 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus safensis strain DMB13     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1402091..1412552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WNC56_RS07050 (WNC56_07040) - 1402693..1403577 (+) 885 WP_406846130.1 cation diffusion facilitator family transporter -
  WNC56_RS07055 (WNC56_07045) - 1403642..1403794 (-) 153 WP_162842519.1 hypothetical protein -
  WNC56_RS07060 (WNC56_07050) - 1404096..1404635 (+) 540 WP_024424707.1 RDD family protein -
  WNC56_RS07065 (WNC56_07055) - 1404761..1406071 (+) 1311 WP_151863008.1 MFS transporter -
  WNC56_RS07070 (WNC56_07060) - 1406145..1407053 (+) 909 WP_024424709.1 chemotaxis protein -
  WNC56_RS07075 (WNC56_07065) kre 1407091..1407552 (-) 462 WP_008356877.1 YkyB family protein Regulator
  WNC56_RS07080 (WNC56_07070) - 1408081..1408257 (+) 177 WP_342492866.1 hypothetical protein -
  WNC56_RS07085 (WNC56_07075) - 1408350..1409267 (-) 918 WP_342492867.1 AraC family transcriptional regulator -
  WNC56_RS07090 (WNC56_07080) - 1409381..1410277 (+) 897 WP_034623334.1 DMT family transporter -
  WNC56_RS07095 (WNC56_07085) - 1410429..1410644 (-) 216 WP_024424712.1 hypothetical protein -
  WNC56_RS07100 (WNC56_07090) - 1410904..1412181 (-) 1278 WP_024426859.1 MFS transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=972772 WNC56_RS07075 WP_008356877.1 1407091..1407552(-) (kre) [Bacillus safensis strain DMB13]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=972772 WNC56_RS07075 WP_008356877.1 1407091..1407552(-) (kre) [Bacillus safensis strain DMB13]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGCGCGCTGCAAAAACTACTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACGAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGTCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment