Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   ACK1X7_RS18485 Genome accession   NZ_CP178393
Coordinates   4392982..4395225 (-) Length   747 a.a.
NCBI ID   WP_413115366.1    Uniprot ID   -
Organism   Streptomyces sp. CY1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4387982..4400225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1X7_RS18470 (ACK1X7_18420) - 4388263..4388490 (+) 228 WP_216342024.1 heavy-metal-associated domain-containing protein -
  ACK1X7_RS18475 (ACK1X7_18425) - 4388578..4390887 (+) 2310 WP_413115365.1 heavy metal translocating P-type ATPase -
  ACK1X7_RS18480 (ACK1X7_18430) - 4391541..4392830 (-) 1290 WP_059142131.1 citrate synthase -
  ACK1X7_RS18485 (ACK1X7_18435) recD/recD2/recDB 4392982..4395225 (-) 2244 WP_413115366.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACK1X7_RS18490 (ACK1X7_18440) - 4395467..4396483 (+) 1017 WP_385153245.1 LacI family DNA-binding transcriptional regulator -
  ACK1X7_RS18495 (ACK1X7_18445) - 4396480..4398048 (+) 1569 WP_385153242.1 sugar ABC transporter ATP-binding protein -
  ACK1X7_RS18500 (ACK1X7_18450) - 4398038..4399981 (+) 1944 WP_385153239.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 80678.10 Da        Isoelectric Point: 6.5217

>NTDB_id=971675 ACK1X7_RS18485 WP_413115366.1 4392982..4395225(-) (recD/recD2/recDB) [Streptomyces sp. CY1]
MLKLAVVEGVLERITYANEENGYTVARVDTGRGSGDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYQTVLPA
TVQGIRRYLGSGLIKGIGPRIADRITEHFGVDTLDVIEERPERLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDASISIVKNEPYRLAADVWGIGFLTADKIAQSVGIPHDSPDRVKAGLQYALSQSADQGHCYLPEEQL
IADAVKLLQVDTGLVIDCLGELAAQDEGVVREPVPGPADGEPVSAVYLVPFHRAEISLAGQVLRLLRTQEDRLPAFGDVD
WDKALGWLASRTGADLAPEQSQAVRLALTEKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDETSMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLRDLLAP
GSPVPAVRLTRIFRQAQQSGVVTNAHRINEGVPPVTQGLSDFFLFVEDDTEEAGRLTVDVAARRIPAKFGLDPRRDVQVL
APMHRGPAGAGTLNGLLQQAITPARPDLAERRFGGRVFRVGDKVTQIRNNYEKGANGVFNGTVGVVTSLDSDEQRLTVRT
DEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLVGSRRALGQAVRTVS
AGRRCTALDHRLGGDVSVERVKRVSER

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=971675 ACK1X7_RS18485 WP_413115366.1 4392982..4395225(-) (recD/recD2/recDB) [Streptomyces sp. CY1]
ATGCTCAAACTCGCGGTGGTCGAAGGGGTCCTGGAGCGGATCACCTACGCCAATGAGGAGAATGGCTATACGGTCGCGCG
GGTGGACACCGGCCGGGGCTCCGGCGATCTGCTGACCGTGGTCGGCTCGCTGCTGGGCGCCCAGCCGGGCGAGTCACTGC
GGATGGAGGGCCGCTGGGGTTCCCATCCGCAATATGGCAAACAGTTCACCGTCGAGAACTACCAGACCGTCCTCCCCGCC
ACCGTCCAGGGCATCCGGCGCTATCTCGGCTCGGGTCTGATCAAGGGCATCGGCCCCCGGATCGCCGACCGGATCACCGA
GCACTTCGGCGTCGACACCCTCGATGTCATCGAGGAGCGGCCCGAGCGGCTGGTCGAGGTCCCGGGCCTCGGTCCCAAGC
GCACCAAGATGATCGCCGCGGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTGATGGTCTTCCTCCAGGGGGTGGGCGTC
TCCACCTCCATCGCGGTGCGGATCTACAAGAAGTACGGCGACGCGTCGATTTCGATTGTGAAGAACGAGCCGTATCGGCT
GGCGGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGTCGGTGGGCATTCCGCATGACAGCCCCG
ACCGGGTGAAGGCCGGTCTCCAGTACGCGCTGTCCCAGTCCGCCGACCAGGGCCACTGCTATCTCCCCGAGGAGCAACTC
ATCGCGGACGCCGTGAAGTTGCTCCAGGTGGACACCGGTCTGGTCATCGACTGCCTGGGGGAGCTGGCGGCCCAGGACGA
GGGCGTGGTGCGTGAGCCGGTCCCGGGCCCGGCGGACGGCGAGCCGGTCTCCGCGGTCTATCTGGTGCCCTTCCACCGCG
CCGAGATCTCCCTCGCCGGCCAGGTGCTGCGGCTGCTGCGCACCCAGGAGGACCGGCTGCCCGCCTTCGGGGACGTGGAC
TGGGACAAGGCGCTGGGCTGGCTGGCGAGCCGCACCGGGGCCGATCTGGCGCCCGAGCAGAGCCAGGCGGTGCGGCTCGC
GCTGACCGAGAAGGTCGCGGTGCTCACCGGCGGGCCGGGCTGCGGCAAGTCGTTCACCGTGCGGTCCGTGGTGGAGCTGG
CCCGCGCCAAGAAGGCGAAGGTGGTGCTCGCGGCGCCCACCGGCCGGGCCGCCAAGCGGCTGTCCGAGCTGACCGGCGCC
GAGGCGTCCACCGTCCACCGGCTGCTGGAGCTGAAGCCCGGCGGGGACGCGGCGTATGACCGGGACCGCCCGCTCGACGC
GGATCTGGTGGTGGTCGACGAGACGTCGATGCTCGATCTGCTGCTGGCCAACAAGCTGGTCAAGGCGGTCCCGCCCGGCG
CCCATCTGCTCTTCGTCGGGGATGTGGACCAGTTGCCCAGCGTGGGCGCCGGGGAGGTGCTGCGCGATCTGCTGGCCCCC
GGCAGCCCCGTTCCGGCGGTGCGGCTGACCCGGATCTTCCGTCAGGCCCAGCAGTCCGGTGTGGTCACCAACGCCCACCG
GATCAACGAGGGGGTGCCGCCGGTCACCCAGGGCCTGTCGGATTTCTTTCTCTTCGTCGAGGACGACACCGAGGAGGCCG
GGCGGCTCACGGTCGATGTGGCGGCCCGCCGCATCCCCGCCAAGTTCGGCCTCGACCCCCGCCGTGACGTGCAGGTTCTG
GCCCCGATGCACCGCGGCCCGGCGGGCGCGGGCACGCTCAACGGACTGCTTCAGCAGGCCATCACCCCGGCCCGTCCGGA
CCTCGCGGAGCGCCGCTTCGGAGGCCGGGTCTTCCGGGTCGGCGACAAGGTGACCCAGATCCGTAACAATTATGAGAAAG
GGGCCAACGGGGTCTTCAACGGCACGGTTGGCGTCGTCACCTCACTCGACAGCGATGAGCAGCGGCTGACCGTGCGGACG
GACGAGGACGAGGAGGTACCGTACGACTTCGACGAGCTGGACGAGCTGGCTCATGCCTATGCGGTGACCATCCACCGGTC
ACAGGGCAGTGAGTACCCGGCCGTCGTGATTCCGGTGACCACCGGGGCCTGGATGATGTTGCAGCGCAACCTTCTGTACA
CGGCGGTGACCCGTGCCAAGCGCCTTGTGGTGCTGGTCGGCTCGCGCCGCGCGCTGGGGCAGGCGGTGCGCACCGTCTCG
GCGGGGAGGCGCTGTACCGCGCTGGATCACCGACTCGGCGGCGATGTGTCAGTCGAGCGTGTCAAGAGGGTTTCCGAACG
ATGA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-639)

AAA domain (AAA_30)

(336-514)

Helix-hairpin-helix domain (HHH_5)

(94-143)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.233

100

0.364

Multiple sequence alignment