Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   MHI53_RS23950 Genome accession   NZ_CP150304
Coordinates   4954548..4954910 (-) Length   120 a.a.
NCBI ID   WP_340372471.1    Uniprot ID   -
Organism   Peribacillus sp. FSL E2-0218     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4949548..4959910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI53_RS23930 (MHI53_23930) - 4950338..4951948 (-) 1611 WP_340372470.1 ABC transporter substrate-binding protein -
  MHI53_RS23935 (MHI53_23935) - 4951993..4952961 (-) 969 WP_061141249.1 dipeptide ABC transporter ATP-binding protein -
  MHI53_RS23940 (MHI53_23940) - 4952942..4953946 (-) 1005 WP_185113036.1 ABC transporter ATP-binding protein -
  MHI53_RS23945 (MHI53_23945) - 4954238..4954384 (-) 147 WP_155645400.1 hypothetical protein -
  MHI53_RS23950 (MHI53_23950) ssbB 4954548..4954910 (-) 363 WP_340372471.1 single-stranded DNA-binding protein Machinery gene
  MHI53_RS23955 (MHI53_23955) - 4955283..4955717 (+) 435 WP_061141252.1 YwpF family protein -
  MHI53_RS23960 (MHI53_23960) - 4955826..4956128 (-) 303 WP_061141253.1 hypothetical protein -
  MHI53_RS23965 (MHI53_23965) fabZ 4956392..4956820 (-) 429 WP_061141254.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MHI53_RS23970 (MHI53_23970) - 4956944..4957198 (-) 255 WP_061141255.1 DNA-directed RNA polymerase subunit beta -
  MHI53_RS23975 (MHI53_23975) - 4957370..4958218 (-) 849 WP_061141256.1 flagellar hook-basal body protein -
  MHI53_RS23980 (MHI53_23980) - 4958274..4959110 (-) 837 WP_340372472.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13652.67 Da        Isoelectric Point: 8.9943

>NTDB_id=970121 MHI53_RS23950 WP_340372471.1 4954548..4954910(-) (ssbB) [Peribacillus sp. FSL E2-0218]
MINQVTLVGRLTKDPVLRYTPDGKAVSNVTLAINRNFRNTVGDYEADFVQCIIWKKSAENTAQYCKKGTLIGITGRIQTR
RYENKDGKNIYVTEVVAEMVQFLGPKQQEVKLEDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=970121 MHI53_RS23950 WP_340372471.1 4954548..4954910(-) (ssbB) [Peribacillus sp. FSL E2-0218]
ATGATTAACCAAGTAACCCTTGTCGGCAGGCTTACGAAGGATCCCGTGTTAAGGTATACCCCCGACGGCAAGGCTGTTTC
CAACGTCACTTTAGCGATCAACCGTAACTTCCGTAATACGGTTGGTGATTACGAAGCGGACTTCGTACAATGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCCCAGTATTGTAAAAAAGGGACACTGATCGGCATCACGGGCAGGATACAAACGAGG
AGATACGAAAACAAGGATGGCAAGAACATATACGTAACGGAAGTGGTTGCAGAGATGGTTCAATTCCTAGGGCCTAAACA
GCAAGAAGTGAAGCTAGAAGATTTCGAGCATATTGGCTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.303

90.833

0.575
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

88.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

57.282

85.833

0.492
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.86

95

0.417
  ssbA Streptococcus mutans UA159

42.982

95

0.408
  ssbB/cilA Streptococcus mitis NCTC 12261

42.105

95

0.4
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.105

95

0.4
  ssbB/cilA Streptococcus pneumoniae Rx1

41.228

95

0.392
  ssbB/cilA Streptococcus pneumoniae D39

41.228

95

0.392
  ssbB/cilA Streptococcus pneumoniae R6

41.228

95

0.392
  ssbB/cilA Streptococcus mitis SK321

41.228

95

0.392

Multiple sequence alignment