Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   ACI7Q4_RS26835 Genome accession   NZ_CP177227
Coordinates   5794996..5795520 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain FS26     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5789996..5800520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI7Q4_RS26820 (ACI7Q4_26820) aroB 5791112..5792218 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  ACI7Q4_RS26825 (ACI7Q4_26825) aroK 5792268..5792786 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ACI7Q4_RS26830 (ACI7Q4_26830) pilQ 5792798..5794942 (-) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  ACI7Q4_RS26835 (ACI7Q4_26835) comL/pilP 5794996..5795520 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ACI7Q4_RS26840 (ACI7Q4_26840) pilO 5795517..5796140 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACI7Q4_RS26845 (ACI7Q4_26845) pilN 5796137..5796733 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ACI7Q4_RS26850 (ACI7Q4_26850) pilM 5796733..5797797 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ACI7Q4_RS26855 (ACI7Q4_26855) - 5797982..5800453 (+) 2472 WP_023518163.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=969979 ACI7Q4_RS26835 WP_003095836.1 5794996..5795520(-) (comL/pilP) [Pseudomonas aeruginosa strain FS26]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=969979 ACI7Q4_RS26835 WP_003095836.1 5794996..5795520(-) (comL/pilP) [Pseudomonas aeruginosa strain FS26]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362