Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   ACJVC4_RS04040 Genome accession   NZ_CP177179
Coordinates   789866..790522 (-) Length   218 a.a.
NCBI ID   WP_002890655.1    Uniprot ID   J7SII5
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 784866..795522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS04025 holA 786612..787646 (+) 1035 WP_037597662.1 DNA polymerase III subunit delta -
  ACJVC4_RS04030 sodA 787742..788347 (+) 606 WP_002890653.1 superoxide dismutase SodA -
  ACJVC4_RS04035 - 788391..789836 (+) 1446 WP_002890654.1 serine hydrolase -
  ACJVC4_RS04040 cclA/cilC 789866..790522 (-) 657 WP_002890655.1 prepilin peptidase Machinery gene
  ACJVC4_RS04045 - 790632..791153 (+) 522 WP_002890656.1 Dps family protein -
  ACJVC4_RS04050 - 791242..791679 (+) 438 WP_002884117.1 Fur family transcriptional regulator -
  ACJVC4_RS04055 - 791787..791993 (+) 207 WP_002890657.1 YqgQ family protein -
  ACJVC4_RS04060 - 791986..792954 (+) 969 WP_037597664.1 ROK family glucokinase -
  ACJVC4_RS04065 typA 793095..794945 (+) 1851 WP_002884130.1 translational GTPase TypA -
  ACJVC4_RS04070 - 794965..795234 (+) 270 WP_002890660.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25214.43 Da        Isoelectric Point: 8.1563

>NTDB_id=969463 ACJVC4_RS04040 WP_002890655.1 789866..790522(-) (cclA/cilC) [Streptococcus salivarius strain MRD-NRLLH]
MLSIIYFFLGASLGSFIGLVCDRFPENSIIFPRSHCSHCKHQLRFSEMIPILSQLFLRSRCRSCQSPIPFRYLFMEIFCG
VICLLYFYDFLSLEVTYFLYFSLCLSIFDLKQKSYPLLIWIVGTVPLLFMGNYYLTFAIGIILAFLSFIKHLNIGEGDFL
YLASASLIFPFSKILLTIELACLLGLAYFLIRRNLKECIAFVPFLFLGIVLLTFYSIV

Nucleotide


Download         Length: 657 bp        

>NTDB_id=969463 ACJVC4_RS04040 WP_002890655.1 789866..790522(-) (cclA/cilC) [Streptococcus salivarius strain MRD-NRLLH]
ATGTTAAGCATTATTTATTTTTTTCTAGGAGCCTCTTTAGGCTCATTTATCGGACTAGTTTGTGATCGTTTTCCTGAGAA
CTCAATTATTTTTCCTAGAAGTCACTGTAGCCATTGCAAGCATCAGTTGCGTTTTTCCGAGATGATTCCTATCCTCTCAC
AACTTTTCTTAAGATCTCGATGTCGTTCATGTCAGTCTCCTATCCCTTTTCGTTACCTCTTTATGGAAATATTTTGTGGG
GTAATATGTCTTCTATATTTCTATGACTTTTTAAGTCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTTTATCTAT
TTTTGATTTGAAACAGAAATCCTATCCACTTCTGATTTGGATAGTTGGAACAGTCCCACTCCTATTCATGGGCAACTATT
ACCTCACATTTGCCATAGGGATAATCCTCGCTTTCCTTTCTTTTATAAAACATCTAAACATTGGGGAAGGTGATTTTCTC
TACTTAGCAAGTGCCTCACTTATTTTCCCATTTTCAAAAATACTTCTAACTATCGAGCTTGCGTGCCTATTAGGGCTAGC
GTACTTCCTTATACGAAGAAATCTTAAGGAATGTATCGCATTTGTCCCATTTCTTTTTCTAGGGATTGTACTTCTTACCT
TTTATTCAATTGTATAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7SII5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.72

98.165

0.39
  cclA/cilC Streptococcus pneumoniae TIGR4

39.72

98.165

0.39
  cclA/cilC Streptococcus mitis NCTC 12261

38.785

98.165

0.381
  cclA/cilC Streptococcus pneumoniae Rx1

38.785

98.165

0.381
  cclA/cilC Streptococcus pneumoniae D39

38.785

98.165

0.381
  cclA/cilC Streptococcus pneumoniae R6

38.785

98.165

0.381