Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   OO773_RS01610 Genome accession   NZ_AP026769
Coordinates   275115..276374 (+) Length   419 a.a.
NCBI ID   WP_040499125.1    Uniprot ID   -
Organism   Helicobacter suis HS1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 270115..281374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO773_RS09790 (HSHS1_03160) - 272289..272498 (+) 210 WP_141556969.1 hypothetical protein -
  OO773_RS01600 (HSHS1_03170) - 272508..273599 (+) 1092 WP_050780156.1 VirB8/TrbF family protein -
  OO773_RS01605 (HSHS1_03180) - 273596..275125 (+) 1530 WP_006564108.1 TrbG/VirB9 family P-type conjugative transfer protein -
  OO773_RS01610 (HSHS1_03190) comB10 275115..276374 (+) 1260 WP_040499125.1 DNA type IV secretion system protein ComB10 Machinery gene
  OO773_RS01615 (HSHS1_03200) - 276394..278535 (+) 2142 WP_232087234.1 collagen-like protein -
  OO773_RS01620 (HSHS1_03210) - 278555..279526 (+) 972 WP_040499126.1 hypothetical protein -
  OO773_RS01625 (HSHS1_03220) - 279538..279813 (+) 276 WP_050780157.1 hypothetical protein -
  OO773_RS01630 - 279978..281064 (+) 1087 Protein_323 RNA-guided endonuclease InsQ/TnpB family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46578.86 Da        Isoelectric Point: 10.0886

>NTDB_id=96882 OO773_RS01610 WP_040499125.1 275115..276374(+) (comB10) [Helicobacter suis HS1]
MDANTKKWLKRGGIVLGGALGLFVLAIVVDKSTEKSKEEILELEESTYPLSDYFFVNGKKKDQLQSLPQIETHQHNTKKD
YNTINKELEAQNKALEKALESAKQEAKKLPQVVVLKNTETPKSIGSVATPQPVAPIVPPRTRRLTKEQLELLNSRMSPFE
PLKDAPKAEIDYGVDSFENLKAQDKGTNENKLLRTITADKMIPAFLITPISSQIAGKVTAQVETDIFANMGRAVLIPKGS
KVIGYYNNNNKIGEYRLNIAWTRIITPQGINIMLTNARGVDVKGYNGLIGKVIARNFSKYGMPLLTSTLSNGLLIALTSA
LANRQNKAGVGNPFFGDYLLMQLTRNTGMSLNQIVGQILADKARINPIIIIREGSRVFISPNLDIFIPKPRHGEVLAQFF
KEKKPVVKSQEESYEENEF

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=96882 OO773_RS01610 WP_040499125.1 275115..276374(+) (comB10) [Helicobacter suis HS1]
ATGGATGCTAACACCAAGAAATGGCTCAAAAGAGGAGGGATTGTGCTGGGGGGAGCTTTAGGTTTGTTTGTGCTAGCCAT
AGTAGTGGATAAGAGCACAGAGAAGTCTAAAGAAGAAATCCTTGAGTTAGAGGAGAGCACCTATCCTTTGAGTGATTATT
TTTTTGTCAATGGCAAGAAAAAAGACCAGCTCCAGAGTTTGCCACAGATAGAAACACACCAGCACAACACCAAAAAAGAC
TACAACACCATCAACAAGGAGCTAGAAGCGCAAAACAAAGCCCTAGAGAAAGCCTTAGAGAGCGCCAAGCAAGAAGCTAA
GAAACTTCCACAAGTGGTGGTGCTTAAAAACACAGAGACACCCAAGTCTATTGGGAGTGTGGCAACACCCCAGCCTGTTG
CTCCTATTGTGCCCCCACGCACCAGAAGACTCACCAAAGAGCAATTAGAGCTCTTAAACTCTAGAATGAGCCCCTTTGAG
CCCCTCAAAGATGCGCCCAAAGCAGAGATTGACTATGGAGTAGATAGCTTTGAAAATCTCAAAGCCCAAGATAAAGGTAC
AAATGAGAATAAGCTCTTAAGAACGATCACCGCTGATAAGATGATTCCAGCCTTTCTGATCACGCCCATCTCTAGCCAAA
TTGCGGGCAAGGTTACTGCACAGGTGGAGACAGATATTTTTGCCAATATGGGCAGGGCTGTGCTCATCCCTAAGGGCTCA
AAGGTTATTGGCTATTACAATAACAACAATAAGATAGGTGAATACCGCCTCAACATTGCATGGACGCGCATTATCACACC
TCAAGGCATTAATATCATGCTCACCAATGCTAGAGGCGTAGATGTGAAGGGCTATAATGGGTTGATTGGTAAGGTCATTG
CCCGTAACTTCTCTAAATATGGCATGCCCTTACTCACCTCCACTCTCTCTAATGGCTTGCTCATCGCGCTCACCTCTGCT
CTAGCTAATAGACAGAATAAGGCAGGGGTGGGCAACCCTTTTTTTGGGGACTATCTCTTGATGCAACTGACCCGCAACAC
AGGGATGAGCCTCAATCAGATCGTAGGACAAATCCTAGCAGACAAAGCCCGTATCAATCCTATTATCATCATTAGAGAAG
GAAGCCGTGTTTTTATCTCCCCTAATTTAGACATCTTCATCCCTAAGCCTAGGCATGGGGAAGTCCTCGCACAATTTTTT
AAAGAGAAAAAGCCCGTTGTTAAATCACAGGAGGAAAGCTATGAGGAAAATGAGTTTTAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(195-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

53.563

97.136

0.52

Multiple sequence alignment