Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   OO778_RS10355 Genome accession   NZ_AP026765
Coordinates   2160971..2161558 (-) Length   195 a.a.
NCBI ID   WP_074191150.1    Uniprot ID   A0AA92LQD3
Organism   Vibrio sp. STUT-A16     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2155971..2166558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO778_RS10335 (VspSTUT16_19020) - 2156052..2157320 (-) 1269 WP_005393205.1 DUF945 family protein -
  OO778_RS10340 (VspSTUT16_19030) - 2157507..2159447 (+) 1941 WP_074191312.1 ATP-binding protein -
  OO778_RS10345 (VspSTUT16_19040) - 2159444..2159941 (+) 498 WP_012841921.1 response regulator -
  OO778_RS10350 (VspSTUT16_19050) - 2160231..2160779 (+) 549 WP_005393208.1 hypothetical protein -
  OO778_RS10355 (VspSTUT16_19060) tfoX 2160971..2161558 (-) 588 WP_074191150.1 TfoX/Sxy family DNA transformation protein Regulator
  OO778_RS10360 (VspSTUT16_19070) - 2161928..2162848 (+) 921 WP_005393212.1 HDOD domain-containing protein -
  OO778_RS10365 (VspSTUT16_19080) - 2163001..2163906 (+) 906 WP_264909709.1 lysine exporter LysO family protein -
  OO778_RS10370 (VspSTUT16_19090) - 2164113..2164625 (+) 513 WP_074191148.1 hypothetical protein -
  OO778_RS10375 (VspSTUT16_19100) panP 2164825..2166471 (+) 1647 WP_257887168.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22466.78 Da        Isoelectric Point: 8.0901

>NTDB_id=96856 OO778_RS10355 WP_074191150.1 2160971..2161558(-) (tfoX) [Vibrio sp. STUT-A16]
MDMTDQAFFKYVRNFSEYQKRSMFGGIGLFTDDAMFALVSNDCCYLRGGNGLDEVFTQLNCEKYKHVKKQTTATVNYYDV
TDLFESGYTGLDELVQKSIEYSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGVDDVETFLELGPVKVFNKVKVAYGN
DVDVKLLWKFAGATDGVHWKLIQEPRKKQLLALCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=96856 OO778_RS10355 WP_074191150.1 2160971..2161558(-) (tfoX) [Vibrio sp. STUT-A16]
ATGGACATGACAGACCAAGCTTTTTTTAAATATGTACGCAACTTTAGTGAGTATCAAAAACGTTCTATGTTCGGTGGTAT
CGGTTTATTCACCGATGACGCTATGTTTGCGCTTGTCAGCAATGATTGCTGCTACTTACGTGGTGGTAATGGATTGGACG
AAGTGTTTACTCAACTGAATTGCGAAAAATATAAGCACGTCAAAAAACAGACGACGGCAACCGTAAATTATTATGACGTA
ACAGATTTGTTTGAATCCGGATATACAGGACTCGATGAACTGGTACAAAAATCAATTGAATACTCAATTAAGGAACGAAA
ATATCAAAAGTCTTCTGCCAGTAGACGTTTGAGAGATCTGCCAAATATGCAGTTAACTCTTGAGCGAATGGTCAAGAAAG
CAGGTGTTGATGACGTAGAAACCTTTTTAGAACTTGGACCTGTAAAAGTCTTCAACAAAGTTAAAGTGGCTTATGGCAAT
GACGTTGATGTTAAGTTGCTTTGGAAATTCGCTGGTGCAACTGACGGTGTTCATTGGAAACTGATTCAAGAGCCGCGTAA
AAAGCAGTTATTGGCGCTGTGTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

92.308

100

0.923
  tfoX Vibrio campbellii strain DS40M4

89.744

100

0.897
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

66.321

98.974

0.656
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

66.321

98.974

0.656
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

66.321

98.974

0.656
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

66.321

98.974

0.656
  tfoX Vibrio cholerae strain A1552

66.321

98.974

0.656
  tfoX Aliivibrio fischeri ES114

59.686

97.949

0.585

Multiple sequence alignment