Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MKX80_RS08160 Genome accession   NZ_CP150260
Coordinates   1601074..1601361 (+) Length   95 a.a.
NCBI ID   WP_154999112.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0972     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1596074..1606361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS08140 (MKX80_08140) - 1597458..1597832 (+) 375 WP_154999110.1 nuclear transport factor 2 family protein -
  MKX80_RS08145 (MKX80_08145) - 1598232..1599464 (-) 1233 WP_182070738.1 aminopeptidase -
  MKX80_RS08150 (MKX80_08150) - 1599555..1599686 (-) 132 WP_003181378.1 protein YkpC -
  MKX80_RS08155 (MKX80_08155) mreBH 1599760..1600767 (-) 1008 WP_003181381.1 rod-share determining protein MreBH -
  MKX80_RS08160 (MKX80_08160) abrB 1601074..1601361 (+) 288 WP_154999112.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MKX80_RS08165 (MKX80_08165) - 1601529..1602866 (+) 1338 WP_154999113.1 ATP-binding protein -
  MKX80_RS08170 (MKX80_08170) - 1602930..1603592 (+) 663 WP_020451237.1 TrkA family potassium uptake protein -
  MKX80_RS08175 (MKX80_08175) ade 1603720..1605441 (+) 1722 WP_154999114.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10582.42 Da        Isoelectric Point: 5.8808

>NTDB_id=968449 MKX80_RS08160 WP_154999112.1 1601074..1601361(+) (abrB) [Bacillus sp. FSL K6-0972]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEINAALNVVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=968449 MKX80_RS08160 WP_154999112.1 1601074..1601361(+) (abrB) [Bacillus sp. FSL K6-0972]
GTGAAAGCAATAGGAGTTGTGAGAAAAGTAGACGAACTCGGCCGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATCTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATTGTCCTGAAAAAATATAAACCCCACGGTGTGT
GCCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAATGGAAAAATTACGCTGAGTCCTGAAGGAGCCGAA
TTGCTTTTGGAAGAAATCAATGCTGCCTTAAACGTAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537

Multiple sequence alignment