Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MKY56_RS12615 Genome accession   NZ_CP150257
Coordinates   2434083..2434418 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus sp. FSL M8-0054     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2429083..2439418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY56_RS12595 (MKY56_12595) gcvT 2429675..2430763 (-) 1089 WP_163130630.1 glycine cleavage system aminomethyltransferase GcvT -
  MKY56_RS12600 (MKY56_12600) - 2431205..2432878 (+) 1674 WP_047182869.1 SNF2-related protein -
  MKY56_RS12605 (MKY56_12605) - 2432899..2433693 (+) 795 WP_076458108.1 YqhG family protein -
  MKY56_RS12610 (MKY56_12610) sinI 2433876..2434049 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  MKY56_RS12615 (MKY56_12615) sinR 2434083..2434418 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  MKY56_RS12620 (MKY56_12620) tasA 2434511..2435296 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  MKY56_RS12625 (MKY56_12625) - 2435360..2435932 (-) 573 WP_003230181.1 signal peptidase I -
  MKY56_RS12630 (MKY56_12630) tapA 2435916..2436677 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  MKY56_RS12635 (MKY56_12635) - 2436949..2437275 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MKY56_RS12640 (MKY56_12640) - 2437317..2437496 (-) 180 WP_029726723.1 YqzE family protein -
  MKY56_RS12645 (MKY56_12645) comGG 2437568..2437942 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  MKY56_RS12650 (MKY56_12650) comGF 2437943..2438326 (-) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  MKY56_RS12655 (MKY56_12655) comGE 2438352..2438699 (-) 348 WP_046381178.1 ComG operon protein 5 Machinery gene
  MKY56_RS12660 (MKY56_12660) comGD 2438683..2439114 (-) 432 WP_046381179.1 comG operon protein ComGD Machinery gene
  MKY56_RS12665 (MKY56_12665) comGC 2439104..2439400 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=968230 MKY56_RS12615 WP_003226345.1 2434083..2434418(+) (sinR) [Bacillus sp. FSL M8-0054]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=968230 MKY56_RS12615 WP_003226345.1 2434083..2434418(+) (sinR) [Bacillus sp. FSL M8-0054]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCGGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment