Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MKZ05_RS00255 Genome accession   NZ_CP150255
Coordinates   47051..47341 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0277     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42051..52341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKZ05_RS00215 (MKZ05_00215) - 42086..42415 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  MKZ05_RS00220 (MKZ05_00220) - 42428..42868 (+) 441 WP_044140388.1 DUF327 family protein -
  MKZ05_RS00225 (MKZ05_00225) holB 42880..43869 (+) 990 WP_327840476.1 DNA polymerase III subunit delta' -
  MKZ05_RS00230 (MKZ05_00230) - 43872..44699 (+) 828 WP_003217932.1 stage 0 sporulation family protein -
  MKZ05_RS00235 (MKZ05_00235) yabA 44714..45067 (+) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  MKZ05_RS00240 (MKZ05_00240) - 45123..45866 (+) 744 WP_044140390.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MKZ05_RS00245 (MKZ05_00245) - 45853..46149 (+) 297 WP_003217970.1 GIY-YIG nuclease family protein -
  MKZ05_RS00250 (MKZ05_00250) rsmI 46127..47005 (+) 879 WP_106033207.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MKZ05_RS00255 (MKZ05_00255) abrB 47051..47341 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MKZ05_RS00260 (MKZ05_00260) metG 47862..49853 (+) 1992 WP_284907844.1 methionine--tRNA ligase -
  MKZ05_RS00265 (MKZ05_00265) - 49935..50702 (+) 768 WP_050945797.1 TatD family hydrolase -
  MKZ05_RS00270 (MKZ05_00270) - 50947..52149 (+) 1203 WP_339160911.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=968052 MKZ05_RS00255 WP_087975202.1 47051..47341(-) (abrB) [Bacillus sp. FSL M8-0277]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=968052 MKZ05_RS00255 WP_087975202.1 47051..47341(-) (abrB) [Bacillus sp. FSL M8-0277]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment