Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   AABJ90_RS18315 Genome accession   NZ_AP028964
Coordinates   3570725..3571159 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3565725..3576159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS18300 (BsubNA05_35360) epsK 3566355..3567206 (-) 852 WP_015252791.1 cyclic-di-GMP receptor EpsK -
  AABJ90_RS18305 (BsubNA05_35370) - 3567187..3568275 (-) 1089 WP_015252792.1 hypothetical protein -
  AABJ90_RS18310 (BsubNA05_35380) topB 3568477..3570660 (-) 2184 WP_015252793.1 DNA topoisomerase III -
  AABJ90_RS18315 (BsubNA05_35390) lrpC 3570725..3571159 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  AABJ90_RS18320 (BsubNA05_35400) ydzA 3571344..3571634 (+) 291 WP_015252794.1 DUF3817 domain-containing protein -
  AABJ90_RS18325 (BsubNA05_35410) amj 3571678..3572487 (-) 810 WP_015252795.1 lipid II flippase Amj -
  AABJ90_RS18330 (BsubNA05_35420) ydaG 3572993..3573415 (-) 423 WP_015252796.1 pyridoxamine 5'-phosphate oxidase family protein -
  AABJ90_RS18335 (BsubNA05_35430) ydaF 3573493..3574044 (-) 552 WP_128992419.1 GNAT family protein -
  AABJ90_RS18340 (BsubNA05_35440) lyxE 3574132..3574635 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  AABJ90_RS18345 (BsubNA05_35450) ydaD 3574651..3575511 (-) 861 WP_033883707.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=96691 AABJ90_RS18315 WP_003246585.1 3570725..3571159(-) (lrpC) [Bacillus subtilis strain NA05 = NBRC 116153]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=96691 AABJ90_RS18315 WP_003246585.1 3570725..3571159(-) (lrpC) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1