Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NST56_RS19430 Genome accession   NZ_CP150195
Coordinates   3715295..3715636 (-) Length   113 a.a.
NCBI ID   WP_010332166.1    Uniprot ID   A0AAP3CTJ2
Organism   Bacillus sp. FSL R5-0560     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3710295..3720636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS19415 (NST56_19415) - 3710532..3713306 (+) 2775 WP_339178564.1 DEAD/DEAH box helicase -
  NST56_RS19420 (NST56_19420) - 3713429..3714286 (-) 858 WP_326191553.1 Cof-type HAD-IIB family hydrolase -
  NST56_RS19425 (NST56_19425) - 3714292..3715068 (-) 777 WP_339178570.1 DeoR/GlpR family DNA-binding transcription regulator -
  NST56_RS19430 (NST56_19430) ssbB 3715295..3715636 (-) 342 WP_010332166.1 single-stranded DNA-binding protein SsbB Machinery gene
  NST56_RS19435 (NST56_19435) - 3715714..3716097 (-) 384 WP_010332167.1 hypothetical protein -
  NST56_RS19440 (NST56_19440) - 3716271..3716681 (+) 411 WP_010332168.1 YwpF-like family protein -
  NST56_RS19445 (NST56_19445) blaOXA 3716735..3717538 (+) 804 WP_326218507.1 class D beta-lactamase -
  NST56_RS19450 (NST56_19450) - 3717620..3718279 (-) 660 WP_339178576.1 class A sortase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12552.29 Da        Isoelectric Point: 8.4667

>NTDB_id=965879 NST56_RS19430 WP_010332166.1 3715295..3715636(-) (ssbB) [Bacillus sp. FSL R5-0560]
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGDIEADYVNCTLWRKTAENTALYCQKGSLVGLSGRIQTR
SYENAEGVKVYVTEVMADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=965879 NST56_RS19430 WP_010332166.1 3715295..3715636(-) (ssbB) [Bacillus sp. FSL R5-0560]
ATGTTCAATCAGGTCATGCTTGTCGGACGTTTAACAAAAGACCCTGAGCTTCGATACACTTCCGCAGGCGCGGCAGTCAC
ACACATTACGATCGCGGTTAACCGCAGCTTCAAAAATGCTTCGGGGGATATTGAAGCGGATTACGTCAATTGCACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGATCTCTCGTCGGCCTAAGCGGAAGAATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTATATGTAACTGAAGTGATGGCTGACACTGTTCGTTTTATGGATCCTAAACC
TCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

92.035

100

0.92
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

93.805

0.575
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.296

95.575

0.442
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.593

95.575

0.407
  ssbB/cilA Streptococcus mitis NCTC 12261

42.593

95.575

0.407
  ssbA Streptococcus mutans UA159

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

41.667

95.575

0.398
  ssbB/cilA Streptococcus pneumoniae D39

41.667

95.575

0.398
  ssbB/cilA Streptococcus pneumoniae R6

41.667

95.575

0.398
  ssbB/cilA Streptococcus mitis SK321

41.667

95.575

0.398
  ssbB Lactococcus lactis subsp. cremoris KW2

39.048

92.92

0.363

Multiple sequence alignment