Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACKFA7_RS07955 Genome accession   NZ_CP175553
Coordinates   1628227..1628589 (+) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1623227..1633589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS07925 (ACKFA7_07925) flgD 1624130..1624570 (+) 441 WP_038458020.1 flagellar hook assembly protein FlgD -
  ACKFA7_RS07930 (ACKFA7_07930) flgG 1624595..1625371 (+) 777 WP_007409783.1 flagellar basal body rod protein FlgG -
  ACKFA7_RS07935 (ACKFA7_07935) - 1625411..1625626 (+) 216 WP_003154243.1 flagellar FlbD family protein -
  ACKFA7_RS07940 (ACKFA7_07940) fliL 1625623..1626042 (+) 420 WP_007611437.1 flagellar basal body-associated protein FliL -
  ACKFA7_RS07945 (ACKFA7_07945) fliM 1626076..1627074 (+) 999 WP_003154240.1 flagellar motor switch protein FliM -
  ACKFA7_RS07950 (ACKFA7_07950) fliY 1627064..1628200 (+) 1137 WP_038458024.1 flagellar motor switch phosphatase FliY -
  ACKFA7_RS07955 (ACKFA7_07955) pilH 1628227..1628589 (+) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  ACKFA7_RS07960 (ACKFA7_07960) fliZ 1628604..1629257 (+) 654 WP_003154237.1 flagella biosynthesis regulatory protein FliZ -
  ACKFA7_RS07965 (ACKFA7_07965) fliP 1629250..1629915 (+) 666 WP_012117556.1 flagellar type III secretion system pore protein FliP -
  ACKFA7_RS07970 (ACKFA7_07970) fliQ 1629930..1630199 (+) 270 WP_003154234.1 flagellar biosynthesis protein FliQ -
  ACKFA7_RS07975 (ACKFA7_07975) fliR 1630206..1630985 (+) 780 WP_003154233.1 flagellar biosynthetic protein FliR -
  ACKFA7_RS07980 (ACKFA7_07980) flhB 1630985..1632064 (+) 1080 WP_038458026.1 flagellar biosynthesis protein FlhB -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=965567 ACKFA7_RS07955 WP_003154238.1 1628227..1628589(+) (pilH) [Bacillus amyloliquefaciens strain 4-9-2]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=965567 ACKFA7_RS07955 WP_003154238.1 1628227..1628589(+) (pilH) [Bacillus amyloliquefaciens strain 4-9-2]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAGGATATTTTAGTGAAGAACGGTTT
TGACGTTGTAGCTGAAGCTTCAGACGGAGCGCAGGCAGTCGAAAAATTCAAAGAGCATTCCCCCGACCTTGTGACAATGG
ATATTACAATGCCTGAAATGGACGGGATTACAGCTTTAAAGGAAATTAAACAAATCGATCCGCAGGCGAAAATCATCATG
TGTTCGGCTATGGGCCAGCAGTCAATGGTTATTGACGCGATTCAAGCCGGCGCAAAAGACTTTATCGTGAAACCGTTCCA
AGCGGACCGCGTGCTTGAAGCCATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383