Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   ACICHK_RS15500 Genome accession   NZ_CP174283
Coordinates   3437554..3439809 (-) Length   751 a.a.
NCBI ID   WP_406837367.1    Uniprot ID   -
Organism   Streptomyces sp. AHU1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3432554..3444809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACICHK_RS15485 (ACICHK_15485) - 3432825..3433064 (+) 240 WP_151474364.1 heavy-metal-associated domain-containing protein -
  ACICHK_RS15490 (ACICHK_15490) - 3433157..3435400 (+) 2244 WP_406837366.1 heavy metal translocating P-type ATPase -
  ACICHK_RS15495 (ACICHK_15495) - 3435978..3437267 (-) 1290 WP_151474362.1 citrate synthase -
  ACICHK_RS15500 (ACICHK_15500) recD/recD2/recDB 3437554..3439809 (-) 2256 WP_406837367.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACICHK_RS15505 (ACICHK_15505) - 3440171..3441001 (-) 831 WP_151474360.1 sugar phosphate isomerase/epimerase -
  ACICHK_RS15510 (ACICHK_15510) - 3440998..3442155 (-) 1158 WP_406837368.1 dihydrodipicolinate synthase family protein -
  ACICHK_RS15515 (ACICHK_15515) - 3442152..3443303 (-) 1152 WP_406837369.1 Gfo/Idh/MocA family protein -
  ACICHK_RS15520 (ACICHK_15520) - 3443611..3444660 (+) 1050 WP_151474357.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81342.98 Da        Isoelectric Point: 6.8327

>NTDB_id=964897 ACICHK_RS15500 WP_406837367.1 3437554..3439809(-) (recD/recD2/recDB) [Streptomyces sp. AHU1]
MTDQAGAAQTGERRLATLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGALLGAQVGESLRMEGRWGSHPQYGKQF
TVENYTTVLPATVQGIRRYLGSGLVKGIGPVFADRITEHFGLDTLRIIEEEPKRLIEVPGLGPKRTKRIADAWEEQKAIK
EVMLFLQTVEVSTSIAVRIYKKYGDASISVVKNQPYRLAADVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSAD
QGHCYLPEERLIADAVKLLQVDTGLVIECLAELAAPPEEGEDPGVVREKVPGPDGGDPVTAVYLVPFHRAELSLSAQLLR
LLRGEGDRMPGFRDVAWDRALAWLRGRTGAELAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARAKGAKVVLA
APTGRAAKRLAELTGAEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQ
LPSVGAGEVLRDLLAERGPIPAVRLTKVFRQAQQSGVVTNAHRINSGQHPLTDGMKDFFLFVEDDTEEAGRLTVDVAARR
IPARFGLDPRRDVQVLAPMHRGPAGAGHLNGLLQQAITPGRPDVAEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVG
VVTSLDTVEQRLMVRTDEDEEVPYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVV
LVGSRKAIGQAVRTVSAGRRCTALDFRLSRS

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=964897 ACICHK_RS15500 WP_406837367.1 3437554..3439809(-) (recD/recD2/recDB) [Streptomyces sp. AHU1]
ATGACCGATCAGGCGGGGGCCGCCCAGACGGGCGAACGACGACTGGCCACGCTGGAAGGCGTGCTCGAACGCATCACGTA
CGCCAACGAGGAGAACGGATACACGGTCGCCCGGGTCGACACCGGCCGGGGCGCCGGCGATCTGCTCACCGTCGTCGGCG
CCCTTCTCGGTGCCCAGGTCGGCGAGTCGCTGCGCATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTC
ACCGTGGAGAACTACACGACGGTGCTCCCGGCCACCGTCCAGGGCATCCGCCGTTACCTCGGCTCCGGCCTGGTCAAGGG
CATCGGACCGGTCTTCGCCGACCGCATCACCGAGCACTTCGGCCTGGACACCCTGCGGATCATCGAGGAGGAGCCGAAGC
GGCTCATCGAGGTCCCGGGACTCGGCCCCAAGCGCACGAAGAGGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAG
GAGGTCATGCTCTTCCTGCAGACGGTGGAGGTCTCGACGTCCATCGCCGTACGCATCTACAAGAAGTACGGCGACGCCTC
GATCTCGGTCGTGAAGAACCAGCCCTACCGCCTGGCGGCCGACGTGTGGGGCATCGGCTTCCTCACCGCCGACAAGATCG
CCCAGTCCGTCGGCATCCCGCACGACAGCCCGGAGCGCGTCAAGGCCGGCCTCCAGTACGCCCTGTCGCAGTCCGCCGAC
CAGGGCCACTGCTACCTCCCCGAGGAGCGGCTGATCGCGGACGCGGTGAAGCTGCTCCAGGTCGACACCGGCCTGGTCAT
CGAGTGCCTCGCCGAACTGGCGGCCCCTCCGGAGGAGGGCGAGGACCCCGGTGTCGTACGGGAGAAGGTGCCGGGCCCGG
ACGGCGGCGACCCGGTGACGGCCGTCTATCTCGTCCCCTTCCACCGTGCCGAGCTCTCGCTCTCCGCGCAGTTGCTGCGC
CTGCTGCGCGGTGAGGGGGACCGGATGCCCGGCTTCCGTGACGTGGCCTGGGACAGGGCGCTGGCCTGGCTGAGGGGGCG
GACGGGCGCGGAGCTGGCCCCCGAGCAGGAGGCGGCGGTCCGGCTCGCGCTCACCGAGAAGGTCGCCGTGCTGACCGGGG
GGCCGGGCTGCGGCAAGTCGTTCACGGTCCGCTCGATCGTGGAGCTGGCCCGCGCCAAGGGGGCCAAGGTCGTCCTCGCG
GCGCCCACCGGCCGCGCCGCCAAGCGTCTGGCGGAGCTGACCGGGGCCGAGGCCTCCACCGTGCACCGGCTCCTGGAGCT
CAAACCGGGCGGCGACGCGGCCTACGACAAGGACCGCCCGCTGGACGCCGATCTGGTCGTCGTGGACGAGGCCTCCATGC
TCGACCTCCTGCTCGCCAACAAACTGGTCAAGGCGGTGCCCCCGGGCGCGCACCTGCTCTTCGTCGGCGACGTCGACCAG
CTTCCGAGCGTCGGCGCGGGCGAGGTGCTGCGCGATCTGCTCGCCGAGCGGGGCCCGATCCCCGCGGTGCGCCTGACCAA
GGTCTTCCGCCAGGCCCAGCAGTCCGGGGTGGTGACCAACGCGCACCGGATCAACTCCGGGCAGCACCCCCTCACCGACG
GCATGAAGGACTTCTTCCTCTTCGTCGAGGACGACACCGAGGAGGCCGGGCGGCTCACCGTGGACGTGGCGGCCCGGCGG
ATCCCGGCCAGGTTCGGTCTCGACCCCCGCCGGGACGTCCAGGTCCTCGCCCCCATGCACCGGGGCCCGGCCGGCGCCGG
CCATCTGAACGGGCTGCTCCAGCAGGCCATCACCCCCGGCCGCCCGGACGTCGCCGAGAAGCGGTTCGGCGGCCGTGTCT
TCAGGGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGACAAGGGCGAGAACGGCGTCTTCAACGGCACCGTGGGC
GTCGTCACCTCCCTCGACACGGTCGAACAGCGGCTCATGGTGCGCACCGACGAGGACGAGGAGGTGCCCTACGAGTTCGA
CGAGCTCGACGAGCTGGCCCACGCCTACGCGGTGACCATCCACCGTTCCCAGGGCAGCGAGTACCCGGCGGTGGTGATCC
CGGTGACCACGGGCGCCTGGATGATGCTCCAGCGCAATCTGCTCTACACGGCGGTCACCCGGGCCAAGAAGCTGGTCGTC
CTCGTCGGTTCGCGCAAGGCGATAGGGCAGGCGGTGCGCACGGTGTCCGCGGGTCGCCGGTGCACGGCCCTGGACTTCCG
GCTCTCCCGCTCGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-655)

Helix-hairpin-helix domain (HHH_5)

(105-154)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)

AAA domain (AAA_30)

(351-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.789

100

0.362