Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ACJEIB_RS13960 Genome accession   NZ_CP174236
Coordinates   3121909..3123159 (+) Length   416 a.a.
NCBI ID   WP_011216592.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF589     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3116909..3128159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEIB_RS13925 (ACJEIB_13925) - 3117392..3117676 (-) 285 WP_041173830.1 hypothetical protein -
  ACJEIB_RS13930 (ACJEIB_13930) - 3117771..3118115 (-) 345 WP_011216588.1 hypothetical protein -
  ACJEIB_RS13935 (ACJEIB_13935) - 3118232..3118861 (+) 630 WP_010948424.1 trimeric intracellular cation channel family protein -
  ACJEIB_RS13940 (ACJEIB_13940) - 3119070..3119564 (-) 495 WP_010948425.1 peptidylprolyl isomerase -
  ACJEIB_RS13945 (ACJEIB_13945) tgt 3119591..3120742 (-) 1152 WP_011216589.1 tRNA guanosine(34) transglycosylase Tgt -
  ACJEIB_RS13950 (ACJEIB_13950) - 3120804..3121295 (-) 492 WP_011216590.1 disulfide bond formation protein B -
  ACJEIB_RS13955 (ACJEIB_13955) - 3121292..3121720 (-) 429 WP_011216591.1 cytochrome c5 family protein -
  ACJEIB_RS13960 (ACJEIB_13960) cqsA 3121909..3123159 (+) 1251 WP_011216592.1 quorum-sensing autoinducer LAI-1 synthase LqsA Regulator
  ACJEIB_RS13965 (ACJEIB_13965) - 3123241..3124266 (-) 1026 WP_010948430.1 response regulator -
  ACJEIB_RS13970 (ACJEIB_13970) - 3124549..3125112 (+) 564 WP_011216593.1 HdeD family acid-resistance protein -
  ACJEIB_RS13975 (ACJEIB_13975) - 3125200..3126489 (-) 1290 WP_011216594.1 HAMP domain-containing sensor histidine kinase -
  ACJEIB_RS13980 (ACJEIB_13980) - 3126724..3127002 (+) 279 WP_408072732.1 transposase -
  ACJEIB_RS13985 (ACJEIB_13985) - 3126989..3127471 (+) 483 WP_126954507.1 IS5 family transposase -
  ACJEIB_RS13990 (ACJEIB_13990) - 3127511..3127681 (+) 171 WP_173362449.1 hypothetical protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 46120.74 Da        Isoelectric Point: 9.2709

>NTDB_id=963965 ACJEIB_RS13960 WP_011216592.1 3121909..3123159(+) (cqsA) [Legionella pneumophila strain SPF589]
MSNTEYQTIDNKTQYINGKEKHQNQAYPEYINHSMEKYYEGRVNKSWQGKHILKGKIPTANSLIFSSNDYLNISQHPQLI
KAQIAAMQKYGNGQMQSAVFLNNSSFLLGQCEKKFSSFLNYSAALLTQSGWSANVGLIQTLAKYNTPVYLDFYAHMSFWS
GVKAARAKPVPFLHNSVDSLKKRIEHHGPGIIAVDSIYSTLGTISPLADYADIARKFKCLLIVDESHSLGTHGSQGKGMV
AKLGLSSQIDIITASLAKALSGRGGIITGDRQLIEYIRYSSLPSIFSSALMPHDLAGFSASLEIITQEEWRRAKLQTNAD
FLREALSCEGINIGGSNSQIVPLVTGSEANTLWLRDELEKEDLFGAVFCSPATPKNKCLIRLSISAHHEKSDLLRVIECL
VRLARKRPDIPLFKGN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=963965 ACJEIB_RS13960 WP_011216592.1 3121909..3123159(+) (cqsA) [Legionella pneumophila strain SPF589]
ATGAGCAATACAGAATACCAAACAATTGATAACAAGACTCAATATATCAATGGAAAAGAAAAACATCAAAACCAAGCTTA
TCCTGAGTACATCAATCATTCCATGGAAAAATATTACGAGGGACGAGTCAATAAATCCTGGCAAGGGAAACACATACTTA
AAGGCAAAATCCCGACTGCAAATTCACTGATTTTTTCGAGCAATGATTATTTAAACATCAGTCAACATCCGCAATTAATT
AAAGCGCAAATTGCTGCGATGCAAAAATATGGTAATGGTCAAATGCAATCTGCTGTATTTTTAAATAACAGCTCTTTTTT
GCTCGGCCAATGTGAAAAGAAATTCAGTTCCTTTTTAAATTATTCTGCGGCACTGCTCACTCAATCAGGCTGGAGCGCTA
ACGTTGGTCTCATACAAACCCTGGCCAAGTACAATACACCAGTGTATCTGGATTTTTATGCCCATATGTCTTTTTGGTCT
GGTGTAAAAGCAGCAAGAGCCAAACCTGTACCGTTTCTACATAATTCAGTCGATTCACTAAAAAAACGAATTGAGCACCA
TGGGCCAGGAATAATTGCAGTAGATTCTATTTATAGTACGCTGGGTACGATTAGTCCATTGGCTGACTATGCTGACATTG
CAAGAAAATTCAAATGTTTGCTCATCGTCGATGAATCTCATTCATTAGGTACGCATGGTTCGCAAGGCAAGGGGATGGTG
GCTAAACTGGGATTATCAAGCCAAATAGACATCATAACAGCCAGCCTGGCTAAAGCCTTATCGGGACGGGGAGGCATCAT
TACAGGAGATAGGCAACTTATAGAATATATCAGATATTCATCTCTACCCTCTATTTTTAGTTCTGCTTTAATGCCTCATG
ATTTAGCAGGATTTAGCGCATCATTGGAAATTATTACTCAAGAAGAATGGAGAAGAGCAAAATTACAAACCAATGCTGAT
TTTTTACGAGAAGCGTTATCATGCGAAGGAATTAATATAGGAGGTAGTAATTCTCAAATAGTCCCTTTAGTTACAGGCAG
CGAGGCTAACACGCTTTGGTTAAGGGATGAGTTAGAAAAAGAAGACCTCTTTGGAGCCGTGTTCTGTTCACCCGCCACTC
CCAAAAATAAATGCCTGATTCGTTTATCCATCAGCGCGCATCACGAAAAATCGGACTTGCTCAGAGTGATTGAGTGCCTG
GTCAGACTTGCAAGAAAAAGACCCGATATTCCTTTGTTTAAGGGTAATTAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(63-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

45.43

89.423

0.406