Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NSQ21_RS12315 Genome accession   NZ_CP150158
Coordinates   2410159..2410962 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus sp. PS210     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2405159..2415962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ21_RS12290 (NSQ21_12290) - 2406297..2407028 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  NSQ21_RS12295 (NSQ21_12295) - 2407107..2407727 (-) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase -
  NSQ21_RS12300 (NSQ21_12300) - 2407747..2408043 (-) 297 WP_339158234.1 hypothetical protein -
  NSQ21_RS12305 (NSQ21_12305) - 2408351..2408503 (+) 153 WP_014480226.1 hypothetical protein -
  NSQ21_RS12310 (NSQ21_12310) - 2408576..2409694 (+) 1119 WP_128993136.1 NADH-dependent flavin oxidoreductase -
  NSQ21_RS12315 (NSQ21_12315) spo0A 2410159..2410962 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  NSQ21_RS12320 (NSQ21_12320) spoIVB 2411238..2412518 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  NSQ21_RS12325 (NSQ21_12325) recN 2412693..2414423 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  NSQ21_RS12330 (NSQ21_12330) argR 2414460..2414909 (-) 450 WP_003230265.1 arginine repressor ArgR -
  NSQ21_RS12335 (NSQ21_12335) - 2415007..2415852 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=963908 NSQ21_RS12315 WP_003226427.1 2410159..2410962(-) (spo0A) [Bacillus sp. PS210]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=963908 NSQ21_RS12315 WP_003226427.1 2410159..2410962(-) (spo0A) [Bacillus sp. PS210]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCTCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1