Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ16_RS01965 Genome accession   NZ_CP150155
Coordinates   368417..368866 (-) Length   149 a.a.
NCBI ID   WP_033883649.1    Uniprot ID   -
Organism   Bacillus sp. PS108     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 363417..373866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ16_RS01925 (NSQ16_01925) - 363857..364053 (+) 197 Protein_335 hypothetical protein -
  NSQ16_RS01930 (NSQ16_01930) - 364089..364409 (+) 321 Protein_336 RDD family protein -
  NSQ16_RS01935 (NSQ16_01935) - 364491..364823 (+) 333 WP_015252849.1 YckD family protein -
  NSQ16_RS01940 (NSQ16_01940) - 364951..365373 (+) 423 WP_174616579.1 MarR family transcriptional regulator -
  NSQ16_RS01945 (NSQ16_01945) - 365361..365702 (+) 342 WP_230488353.1 DUF3147 family protein -
  NSQ16_RS01950 (NSQ16_01950) - 365721..366449 (+) 729 WP_230488352.1 AAA family ATPase -
  NSQ16_RS01955 (NSQ16_01955) bglC 366522..367955 (+) 1434 WP_230488351.1 6-phospho-beta-glucosidase -
  NSQ16_RS01960 (NSQ16_01960) nin/comJ 367992..368390 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  NSQ16_RS01965 (NSQ16_01965) nucA/comI 368417..368866 (-) 450 WP_033883649.1 DNA-entry nuclease Machinery gene
  NSQ16_RS01970 (NSQ16_01970) tlpC 369034..370755 (-) 1722 WP_230488350.1 methyl-accepting chemotaxis protein TlpC -
  NSQ16_RS01975 (NSQ16_01975) hxlB 370866..371423 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  NSQ16_RS01980 (NSQ16_01980) hxlA 371429..372061 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  NSQ16_RS01985 (NSQ16_01985) hxlR 372294..372656 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16454.42 Da        Isoelectric Point: 4.5282

>NTDB_id=963629 NSQ16_RS01965 WP_033883649.1 368417..368866(-) (nucA/comI) [Bacillus sp. PS108]
MNITTDIIKTILLVIVIIAAAAIGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=963629 NSQ16_RS01965 WP_033883649.1 368417..368866(-) (nucA/comI) [Bacillus sp. PS108]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTATCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGTGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98