Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   WKU35_RS09650 Genome accession   NZ_CP150127
Coordinates   1972184..1972909 (+) Length   241 a.a.
NCBI ID   WP_000688494.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus RN4220     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1967184..1977909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKU35_RS09620 - 1967403..1968029 (+) 627 WP_000522384.1 nitroreductase family protein -
  WKU35_RS09625 - 1968390..1969175 (+) 786 WP_000867960.1 carbon-nitrogen family hydrolase -
  WKU35_RS09630 hld 1969772..1969852 (-) 81 WP_000046022.1 delta-hemolysin -
  WKU35_RS09635 agrB 1970142..1970711 (+) 570 WP_001105707.1 accessory gene regulator AgrB -
  WKU35_RS09640 agrD 1970708..1970848 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  WKU35_RS09645 agrC 1970873..1972165 (+) 1293 WP_001554031.1 quorum-sensing sensor histidine kinase AgrC -
  WKU35_RS09650 agrA 1972184..1972909 (+) 726 WP_000688494.1 quorum-sensing response regulator AgrA Regulator
  WKU35_RS09655 - 1972973..1973080 (+) 108 WP_001790167.1 hypothetical protein -
  WKU35_RS09660 - 1973268..1974227 (-) 960 WP_001253312.1 carbohydrate kinase -
  WKU35_RS09665 - 1974224..1975708 (-) 1485 WP_000141414.1 sucrose-6-phosphate hydrolase -
  WKU35_RS09670 - 1975857..1976807 (-) 951 WP_000790330.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 28289.35 Da        Isoelectric Point: 6.3009

>NTDB_id=962984 WKU35_RS09650 WP_000688494.1 1972184..1972909(+) (agrA) [Staphylococcus aureus subsp. aureus RN4220]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKNII
R

Nucleotide


Download         Length: 726 bp        

>NTDB_id=962984 WKU35_RS09650 WP_000688494.1 1972184..1972909(+) (agrA) [Staphylococcus aureus subsp. aureus RN4220]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAAATATAATA
AGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

98.34

0.983