Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AABA19_RS07275 Genome accession   NZ_AP028609
Coordinates   1433988..1434710 (-) Length   240 a.a.
NCBI ID   WP_001010368.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1428988..1439710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA19_RS07265 (TKY121806_14430) - 1431562..1432728 (-) 1167 WP_000521363.1 MalY/PatB family protein -
  AABA19_RS07270 (TKY121806_14440) - 1432736..1433830 (-) 1095 WP_000031966.1 cystathionine gamma-synthase -
  AABA19_RS07275 rcrP 1433988..1434710 (-) 723 WP_001010368.1 ABC transporter ATP-binding protein Regulator
  AABA19_RS07280 (TKY121806_14460) - 1434897..1435663 (-) 767 Protein_1442 ABC transporter ATP-binding protein -
  AABA19_RS07285 (TKY121806_14470) amiA 1435835..1437793 (-) 1959 WP_338170524.1 peptide ABC transporter substrate-binding protein Regulator
  AABA19_RS07290 (TKY121806_14480) - 1437997..1439619 (-) 1623 WP_000017793.1 putative polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27287.14 Da        Isoelectric Point: 5.0452

>NTDB_id=95972 AABA19_RS07275 WP_001010368.1 1433988..1434710(-) (rcrP) [Streptococcus pneumoniae strain Sep4]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLEQFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDESTANLDADSEYAIISILYSALKEKTVVIIAHRLSTVKDVDCIFFLEERKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=95972 AABA19_RS07275 WP_001010368.1 1433988..1434710(-) (rcrP) [Streptococcus pneumoniae strain Sep4]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCAGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTATTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAATCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTATCCTCTATTCTGCATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGAGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363