Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   ACIX90_RS04165 Genome accession   NZ_CP173319
Coordinates   898527..900821 (-) Length   764 a.a.
NCBI ID   WP_404811232.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain APL2401251E     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 893527..905821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIX90_RS04140 (ACIX90_04140) - 894115..894357 (-) 243 WP_005601001.1 alternative ribosome-rescue factor A -
  ACIX90_RS04145 (ACIX90_04145) - 894525..895280 (+) 756 WP_005597193.1 class I SAM-dependent methyltransferase -
  ACIX90_RS04150 (ACIX90_04150) - 895339..896400 (+) 1062 WP_005612034.1 AI-2E family transporter -
  ACIX90_RS04155 (ACIX90_04155) yvcK 896430..897359 (+) 930 WP_005604296.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  ACIX90_RS04160 (ACIX90_04160) queA 897407..898492 (+) 1086 WP_404811231.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ACIX90_RS04165 (ACIX90_04165) rec2 898527..900821 (-) 2295 WP_404811232.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACIX90_RS04170 (ACIX90_04170) sstT 900921..902135 (-) 1215 WP_005597199.1 serine/threonine transporter SstT -
  ACIX90_RS04175 (ACIX90_04175) - 902384..902746 (+) 363 WP_005597201.1 diacylglycerol kinase -
  ACIX90_RS04180 (ACIX90_04180) ushA 902827..904470 (+) 1644 WP_005607695.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA -
  ACIX90_RS04185 (ACIX90_04185) - 904549..904854 (+) 306 WP_005607697.1 DUF4298 domain-containing protein -

Sequence

Protein


Download         Length: 764 a.a.        Molecular weight: 88797.81 Da        Isoelectric Point: 9.6396

>NTDB_id=958099 ACIX90_RS04165 WP_404811232.1 898527..900821(-) (rec2) [Actinobacillus pleuropneumoniae strain APL2401251E]
MNLDRFSILICLTFLPLLWLPYQWFAFVILLFLIVVLYGLYTRCLMLLVFALVMGGSYYSVWQFAKKAENQTAGKYYEKI
EITRLVKQSTYQTAIAKRENNEQIYLHWQSDVPLVLGATYQAELQFRPISARANIGNFDRQRWYFAQHLQGSTTVREAKR
IEREQSTLRQAFLTKVRRQTETLAAQGLLLALAFGERVWINEHHWQIFQKTSTAHLIAISGLHIGLAFLCGFWCAKALQW
CLLRCKSWQAVGFYYFFAHIIGIIFAIGYSYFAGFSIPTIRALTAICFVLLCRFLRYHYTPWQYWWRVVTVLLLFDPITV
LSDSFWLSILAVMSLLIWYQYFPLSAFLRKFAYRKWGKIVRFCLGLIHLQCGILLIFTPVQFFFFEGISLTALPANLVIV
PLYSFVLVPLVLIGLLTDNGFNTWQLANRLIGYSLDYLETISQQWIWLSHRQQAQWLIIDLAILFILYGILHARTALYWY
KRYALLLCCQCVFYLFQLDKVPLQWITFDVGQGLAQAFIYYDTSGQKKAIFYDTGIGWGKHDNGGSMASIEILPYLRRHQ
IEVEAIFLSHDDNDHSGGSADLLNAYPNARLISSSLKPYANVQPEACIQGKRWRFGRLEFEAVYPKERVERAKNADSCII
LAKFDRFQILLTGDTGIEQERKIAELLNGIDFLQVAHHGSKTSSSHTLLAKSKPQLAVVSVGRWNPWRMPHPKVVERFEQ
HKIPLVTTAKQGMIIVNFDSDKWQLKTARNDFSPWYRRLYGKNR

Nucleotide


Download         Length: 2295 bp        

>NTDB_id=958099 ACIX90_RS04165 WP_404811232.1 898527..900821(-) (rec2) [Actinobacillus pleuropneumoniae strain APL2401251E]
ATGAATCTTGACCGCTTTTCTATTCTTATTTGTCTCACTTTTTTACCTCTTCTTTGGCTGCCGTATCAATGGTTTGCTTT
TGTTATTCTTCTTTTTCTAATTGTTGTGCTATACGGTTTATATACGCGTTGTTTAATGCTGCTGGTATTTGCGTTAGTAA
TGGGTGGAAGTTATTACTCCGTATGGCAGTTTGCAAAAAAGGCCGAAAATCAGACCGCCGGTAAATACTACGAAAAAATT
GAAATAACTCGTTTGGTTAAACAATCGACTTATCAAACGGCAATTGCTAAAAGGGAGAATAATGAACAGATTTATCTGCA
TTGGCAAAGTGACGTTCCTTTGGTTTTAGGCGCAACTTATCAGGCGGAACTGCAGTTTCGTCCGATTTCTGCACGTGCGA
ATATAGGTAATTTTGATCGGCAACGTTGGTATTTCGCCCAACATTTACAGGGAAGTACGACTGTACGAGAAGCAAAGCGA
ATTGAGCGGGAGCAAAGCACATTACGTCAAGCGTTCTTAACTAAGGTTCGACGACAGACCGAAACATTAGCCGCTCAAGG
ACTATTACTTGCTTTGGCATTCGGTGAACGAGTGTGGATTAATGAGCATCATTGGCAAATTTTCCAAAAGACTTCAACCG
CACATTTAATTGCGATTTCCGGCTTACATATCGGTTTGGCGTTTTTATGCGGATTTTGGTGCGCTAAGGCGTTGCAATGG
TGTTTATTACGTTGTAAGAGCTGGCAAGCGGTTGGATTTTACTACTTTTTTGCTCATATTATCGGAATCATTTTTGCGAT
AGGTTATAGTTATTTTGCCGGATTCTCCATACCGACCATACGTGCATTGACGGCGATTTGCTTCGTATTATTATGTCGAT
TCCTGCGCTATCACTATACGCCGTGGCAATATTGGTGGCGGGTTGTCACGGTATTGTTATTATTTGATCCGATTACCGTG
TTATCAGACAGTTTTTGGCTTTCTATTTTAGCTGTGATGAGTTTACTGATTTGGTATCAATATTTCCCGTTATCCGCTTT
TTTAAGAAAGTTTGCCTATCGTAAATGGGGAAAAATCGTTCGATTTTGTCTCGGACTCATCCATTTACAATGCGGTATTT
TGCTTATTTTTACCCCGGTACAATTTTTCTTTTTTGAGGGCATATCGCTTACGGCACTACCGGCAAATTTAGTGATCGTA
CCTTTATATAGTTTCGTATTAGTACCCTTGGTTTTAATCGGCTTATTAACCGATAACGGCTTTAATACTTGGCAATTAGC
GAATAGATTAATCGGCTATAGTTTAGATTATTTAGAAACGATTTCTCAACAGTGGATTTGGTTGAGTCATCGACAACAGG
CGCAATGGCTGATTATTGACTTAGCGATATTGTTTATTTTATATGGCATATTACATGCGCGAACCGCATTATACTGGTAT
AAAAGATATGCTTTATTATTGTGTTGTCAATGCGTTTTCTATTTATTTCAATTAGATAAAGTACCGTTACAGTGGATCAC
TTTTGATGTCGGGCAAGGGTTGGCTCAGGCGTTTATTTATTATGATACAAGCGGTCAAAAAAAGGCGATTTTTTACGATA
CTGGGATTGGATGGGGAAAGCATGATAACGGCGGATCTATGGCTTCGATTGAAATACTACCTTATTTACGCCGCCATCAA
ATTGAAGTCGAAGCCATATTTTTAAGCCATGACGATAATGATCATTCCGGCGGATCGGCGGATTTACTTAACGCTTATCC
GAATGCAAGACTTATTTCAAGTAGCCTTAAACCTTATGCAAACGTTCAACCTGAGGCTTGTATTCAAGGAAAAAGATGGC
GATTCGGCAGATTAGAATTTGAAGCCGTTTATCCTAAAGAGCGTGTAGAAAGAGCGAAAAATGCCGATTCTTGCATCATT
TTGGCAAAATTCGACCGCTTTCAAATATTATTAACCGGCGATACCGGCATTGAGCAAGAACGAAAAATCGCAGAACTATT
AAATGGTATTGATTTTTTGCAGGTGGCTCATCACGGCAGTAAAACCAGTAGTAGTCATACGCTATTGGCAAAAAGCAAAC
CTCAGTTAGCGGTAGTTTCCGTCGGGCGGTGGAACCCGTGGAGAATGCCTCATCCAAAAGTGGTTGAAAGATTTGAACAG
CATAAGATTCCGTTAGTGACTACGGCAAAGCAGGGAATGATCATTGTTAATTTTGATTCGGATAAATGGCAATTAAAGAC
GGCTCGAAACGATTTTTCACCTTGGTATCGGCGTTTATACGGAAAAAATAGATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(525-702)

Competence protein (Competence)

(192-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

40.233

100

0.407