Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACIO07_RS05060 Genome accession   NZ_CP173228
Coordinates   977598..978317 (-) Length   239 a.a.
NCBI ID   WP_410683297.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 972598..983317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO07_RS05045 (ACIO07_05050) recC 973230..976634 (-) 3405 WP_410683295.1 exodeoxyribonuclease V subunit gamma -
  ACIO07_RS05050 (ACIO07_05055) comQ 976646..976912 (-) 267 WP_410683296.1 DUF5374 domain-containing protein Machinery gene
  ACIO07_RS05055 (ACIO07_05060) - 976931..977596 (-) 666 WP_110480075.1 DUF2572 family protein -
  ACIO07_RS05060 (ACIO07_05065) comO 977598..978317 (-) 720 WP_410683297.1 hypothetical protein Machinery gene
  ACIO07_RS05065 (ACIO07_05070) comN 978318..978839 (-) 522 WP_410683298.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIO07_RS05085 (ACIO07_05090) pal 979479..979931 (-) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  ACIO07_RS05090 (ACIO07_05095) tolB 979942..981231 (-) 1290 WP_410681049.1 Tol-Pal system beta propeller repeat protein TolB -
  ACIO07_RS05095 (ACIO07_05100) tolA 981283..982443 (-) 1161 WP_410683299.1 cell envelope integrity protein TolA -
  ACIO07_RS05100 (ACIO07_05105) tolR 982460..982882 (-) 423 WP_046098639.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27774.04 Da        Isoelectric Point: 7.9552

>NTDB_id=957397 ACIO07_RS05060 WP_410683297.1 977598..978317(-) (comO) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
MYHRHIKGQSLLSLMLSISLSSFLLIIIFSFYTYSQKQNQEMRMQLYLQNEIERVLQLMAKDLRRSGFRAVTEKLQVSNF
PFFELDDKGTSVLISQASGEAMGSCVLFFYDLDSSGCIGSTYTKGLCIQDGKNQVREIERELFGYRLNKKMLETRLTYKN
TVNQECSQEQCRTYTQQPACEKGGWVDLFDNKEIAISQFFLQWLKEGELIEAHLMGYLVKQPHIQYKSHIVIPLLNQGR

Nucleotide


Download         Length: 720 bp        

>NTDB_id=957397 ACIO07_RS05060 WP_410683297.1 977598..978317(-) (comO) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
ATGTATCATCGCCATATAAAAGGACAGAGCTTATTATCTTTAATGCTTTCTATTTCTTTATCTTCTTTCTTATTAATCAT
TATTTTTTCTTTTTATACCTATAGCCAAAAGCAAAACCAAGAAATGCGAATGCAATTATATTTACAAAATGAAATTGAAC
GCGTGCTTCAATTAATGGCGAAAGATTTACGGCGTTCTGGATTTCGGGCGGTTACAGAAAAACTGCAAGTTTCCAATTTT
CCTTTTTTTGAACTGGATGACAAAGGAACAAGCGTATTGATTAGCCAAGCTTCAGGGGAGGCGATGGGAAGTTGTGTACT
TTTTTTCTATGATTTAGATAGTTCTGGCTGTATTGGCTCAACTTATACCAAAGGGCTTTGCATTCAAGATGGAAAAAATC
AAGTAAGAGAGATTGAACGTGAGTTATTTGGTTATCGCTTAAATAAAAAAATGTTAGAAACCCGTTTAACTTATAAAAAT
ACGGTAAATCAGGAATGTTCTCAAGAACAATGTCGAACTTATACTCAGCAACCTGCATGCGAAAAAGGAGGATGGGTGGA
TTTATTTGATAACAAAGAAATTGCCATTTCTCAGTTTTTCTTACAATGGCTAAAAGAAGGAGAATTAATTGAAGCCCATC
TTATGGGATATTTAGTCAAACAACCGCATATCCAGTATAAAAGCCATATTGTTATTCCATTGCTTAATCAAGGTCGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

46.635

87.029

0.406