Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   WHN33_RS04425 Genome accession   NZ_CP148898
Coordinates   794413..796218 (+) Length   601 a.a.
NCBI ID   WP_343363719.1    Uniprot ID   -
Organism   Listeria seeligeri strain 43-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 789413..801218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHN33_RS04400 - 789460..790536 (+) 1077 WP_003749116.1 ABC transporter ATP-binding protein -
  WHN33_RS04405 - 790533..791495 (+) 963 WP_012986254.1 ATP-binding cassette domain-containing protein -
  WHN33_RS04410 spxA 791818..792213 (+) 396 WP_003720569.1 transcriptional regulator SpxA -
  WHN33_RS04415 mecA 792445..793098 (+) 654 WP_003753360.1 adaptor protein MecA -
  WHN33_RS04420 - 793224..794333 (+) 1110 WP_185468416.1 competence protein CoiA family protein -
  WHN33_RS04425 pepF 794413..796218 (+) 1806 WP_343363719.1 oligoendopeptidase F Regulator
  WHN33_RS04430 - 796506..796757 (+) 252 WP_003749106.1 DUF3116 family protein -
  WHN33_RS04435 isdC 796977..797600 (+) 624 WP_185468414.1 heme uptake protein IsdC -
  WHN33_RS04440 - 797613..799319 (+) 1707 WP_012986250.1 NEAT domain-containing protein -
  WHN33_RS04445 isdE 799402..800274 (+) 873 WP_343363720.1 heme ABC transporter substrate-binding protein IsdE -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68747.96 Da        Isoelectric Point: 4.5801

>NTDB_id=956079 WHN33_RS04425 WP_343363719.1 794413..796218(+) (pepF) [Listeria seeligeri strain 43-1]
MSKTNALPLREEVPENLTWDLTSIYANDEAWEEAFIQLQKIAEESTKFKGRLADNSQTLYEALQFRDKAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDESVLKQFLEENQDLQLYSHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKNEDGEEIEITHGRYGKLLESNLLRVRREAFLGVYSVYEGLKNTLASTLNG
QVKKSNFYASTRGYKSAREAALSNNHIPETVYDSLLKSVNENANLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFS
YDEAKELVLEALKPLGEEYQSILKEAFDSRWIDVMENKGKRSGAYSSGSYSTNPYILLNWQDNINNVYTLAHELGHSVHS
YYTRENQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAVHQADQNGV
ALTADYLTETYFDINKKYYGEEMVYDEEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQPAITAYIDFLKAG
SSDYPIDVLKKAGVDMATPDPVDDALKVFAQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=956079 WHN33_RS04425 WP_343363719.1 794413..796218(+) (pepF) [Listeria seeligeri strain 43-1]
ATGAGTAAAACAAACGCATTACCACTAAGAGAAGAAGTGCCAGAAAATTTAACTTGGGACTTAACGTCAATTTATGCAAA
TGATGAAGCTTGGGAGGAAGCATTTATACAATTGCAAAAGATAGCAGAAGAGAGTACTAAATTTAAAGGACGTTTAGCGG
ATAATAGTCAAACACTATACGAAGCATTGCAATTTCGCGATAAAGCTTATGATTTGATTAGTAACCTGTATGTATATGCT
CATTTAAAGATGGATCAAGATACAGCTAATGCAAAATATCAGGGCCTACATAGTCGAGCTGGTAGTTTAGTCACAAAATT
GATGTCAGCATTATCTTATTATGATCCAGAGATTTTAGCTATGGATGAAAGTGTGTTAAAACAATTTTTGGAAGAGAATC
AAGACTTACAGTTATACTCGCATCTTTTAGAAGAGCTAAATCTTAGCAGACCTTATATTTTAAGTGAAAAAGAAGAAGCT
CTACTTGCTAATGCGGGTGAAGTTCTTGGAAGCTCCTCGAATACGTTTAACACGTTAAATAATGCAGATATGAAATTTCC
AACAATTAAAAACGAAGATGGTGAAGAGATAGAAATCACGCATGGTCGTTATGGTAAGTTATTAGAAAGTAATCTTCTAC
GTGTTCGTAGAGAGGCTTTTCTAGGTGTATATTCCGTTTATGAAGGTTTGAAAAATACGCTTGCTTCTACACTAAATGGA
CAAGTAAAAAAATCTAATTTTTATGCTTCTACTCGTGGCTATAAGTCTGCACGTGAAGCTGCATTATCAAATAACCATAT
TCCTGAAACAGTGTATGATTCATTGCTTAAGTCTGTAAATGAAAATGCTAATTTACTTCACCGATATGTAAAATTGCGTA
AAGAATTATTAGGTTTAGAAGAGTTGCATATGTATGATCTTTATACTCCATTATCAGATGATGTTAATTTGGAATTTAGT
TATGATGAGGCGAAAGAACTTGTACTTGAAGCATTAAAACCACTTGGTGAAGAATACCAATCAATTCTGAAAGAAGCTTT
TGATAGTCGTTGGATTGATGTGATGGAAAATAAAGGCAAACGTAGTGGTGCTTATTCATCAGGTTCTTATAGCACAAATC
CTTATATTTTATTGAATTGGCAAGATAATATTAATAATGTGTATACACTTGCGCATGAACTTGGACATAGTGTGCATAGT
TACTATACAAGAGAAAATCAGCCTTTCGTCTATGGAGATTATTCGATTTTCTTGGCAGAAGTTGCATCAACAACAAATGA
GAACCTTTTGACGGATTACTTGTTAAAAAAATATGATGATCCAAAAGTTCGCGCATATTTACTCAACCACTATTTGGATG
GATTCAAAGGAACTGTTTTCCGTCAGACGCAATTTGCTGAGTTTGAGCATGCGGTTCACCAAGCTGATCAAAATGGTGTA
GCTTTGACGGCAGATTATTTAACTGAAACGTATTTTGACATTAATAAAAAATATTATGGTGAGGAAATGGTCTATGATGA
AGAGATTGGTTATGAATGGTCTCGGATTCCTCATTTCTATATGAACTATTATGTATTTCAGTATGCAACTGGGTTTTCAG
CTGCCTCTGCGCTTAGTGCAAAAATTTTAACAGAAGGGCAACCTGCTATAACTGCATATATCGACTTTTTGAAAGCGGGT
AGTTCTGATTATCCTATTGATGTACTTAAGAAAGCAGGCGTTGACATGGCGACTCCAGATCCAGTGGATGATGCTTTAAA
AGTATTCGCTCAACGGTTAGATGAATTAGAAAAACTTGTTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(214-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.338

98.502

0.496