Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACF1RT_RS09685 Genome accession   NZ_CP172847
Coordinates   1944137..1945405 (+) Length   422 a.a.
NCBI ID   WP_002274643.1    Uniprot ID   -
Organism   Streptococcus mutans strain DPC6143     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1939137..1950405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS09650 (ACF1RT_09650) - 1939634..1939828 (+) 195 WP_226711266.1 hypothetical protein -
  ACF1RT_RS09655 (ACF1RT_09655) - 1939856..1940153 (-) 298 Protein_1851 LacI family DNA-binding transcriptional regulator -
  ACF1RT_RS09660 (ACF1RT_09660) - 1940215..1940958 (-) 744 WP_002308286.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  ACF1RT_RS09665 (ACF1RT_09665) prmA 1940959..1941912 (-) 954 WP_226711268.1 50S ribosomal protein L11 methyltransferase -
  ACF1RT_RS09670 (ACF1RT_09670) - 1942067..1942966 (-) 900 WP_226711269.1 Abi family protein -
  ACF1RT_RS09675 (ACF1RT_09675) - 1943038..1943508 (-) 471 WP_002265248.1 DUF3013 family protein -
  ACF1RT_RS09680 (ACF1RT_09680) - 1943656..1944147 (+) 492 WP_002289929.1 GNAT family N-acetyltransferase -
  ACF1RT_RS09685 (ACF1RT_09685) rarA 1944137..1945405 (+) 1269 WP_002274643.1 replication-associated recombination protein A Machinery gene
  ACF1RT_RS09700 (ACF1RT_09700) - 1945810..1947726 (-) 1917 WP_019313454.1 heavy metal translocating P-type ATPase -
  ACF1RT_RS09705 (ACF1RT_09705) - 1947825..1948619 (+) 795 WP_002351742.1 helix-turn-helix domain-containing protein -
  ACF1RT_RS09710 (ACF1RT_09710) - 1948788..1949813 (-) 1026 WP_226711271.1 putative sulfate exporter family transporter -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46498.87 Da        Isoelectric Point: 6.5109

>NTDB_id=954468 ACF1RT_RS09685 WP_002274643.1 1944137..1945405(+) (rarA) [Streptococcus mutans strain DPC6143]
MPNNLALRMRPRDISEVIGQKHLVGQGKIISRMVTANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGQIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAMQ
VALTDTERGFDFEVKLDDDALDFIAQATNGDLRSAYNSLDLAIMSTQPDDNGSRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTIIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKAIADLHKSGTIPIPRHLRDGHYAGSKELGNAQDYLYPHAYPEKWVKQQYLPDKLKGANYFTA
NETGKYERALGANKSKIDQLSQ

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=954468 ACF1RT_RS09685 WP_002274643.1 1944137..1945405(+) (rarA) [Streptococcus mutans strain DPC6143]
ATGCCAAATAACCTCGCACTTCGTATGCGCCCTCGAGATATCTCTGAAGTTATCGGACAAAAGCATCTAGTCGGTCAAGG
CAAGATTATTTCGCGAATGGTCACTGCTAACCGTCTGTCTTCCATGATTCTTTATGGTCCTCCCGGAATTGGAAAAACCT
CAATCGCTTCTGCCATCGCTGGTACAACCAAATTTGCCTTTCGTACCTTCAATGCAACAACCGACACTAAAAAACGCCTA
CAGGAAATTGCTGAAGAAGCTAAATTTTCAGGTGGTTTGGTTTTACTCCTAGATGAAATTCATCGTCTAGATAAAACTAA
GCAAGATTTTCTTCTCCCCTTGTTGGAAAACGGACAAATTATCATGATTGGCGCAACCACTGAAAATCCCTTTTTCTCTG
TCACCCCTGCCATTCGCTCGCGTGTTCAGATTTTTGAATTAGAGCCATTATCAAATGAGGATATCAAAAAAGCTATGCAA
GTAGCTCTGACAGATACAGAGCGCGGTTTTGATTTTGAAGTCAAATTAGATGATGATGCTCTTGACTTCATTGCGCAAGC
CACCAATGGCGACTTGCGCTCTGCCTATAATTCTCTTGATTTAGCCATCATGTCCACCCAGCCAGATGACAATGGTAGTC
GCCACATCACCTTAGACACTGTTGAAAACAGCCTACAGCGCAGCTACATTACCATGGACAAGGATGGTGATGGCCACTAT
GATGTCTTGTCCGCCTTACAAAAATCTATTCGCGGTTCAGATGTCAATGCCAGCCTTCACTATGCTGCCAGATTAATCGA
AGCTGGTGATCTGCCAAGTCTAGCTAGACGTTTAACCATTATTGCTTACGAAGATATCGGCTTAGCCAATCCTGATGCAC
AGATTCATACAGTGACAGCGCTGGAAGCAGCCCAAAAAATTGGTTTTCCTGAAGCCCGCATTTTAATTGCCAATGTGGTT
ATTGATTTAGCACTCTCACCTAAGTCTAATTCCGCTTATGTTGCTATGGACAAGGCCATTGCAGATCTTCATAAGAGCGG
CACGATCCCTATTCCTCGCCACTTGCGTGATGGTCATTACGCTGGCAGTAAAGAATTGGGCAATGCCCAAGATTATCTCT
ACCCGCATGCCTATCCGGAAAAATGGGTTAAGCAGCAATATTTACCAGACAAACTCAAAGGAGCTAACTATTTTACTGCC
AATGAAACAGGTAAATACGAACGGGCATTAGGAGCTAATAAGAGTAAGATTGACCAGCTCTCCCAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.705

96.445

0.576