Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACHGMI_RS16255 Genome accession   NZ_CP172417
Coordinates   2950136..2950831 (-) Length   231 a.a.
NCBI ID   WP_041351757.1    Uniprot ID   -
Organism   Bacillus subtilis strain AKPS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2945136..2955831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS16230 minD 2946072..2946878 (-) 807 WP_014664846.1 septum site-determining protein MinD -
  ACHGMI_RS16235 minC 2946880..2947560 (-) 681 WP_017696329.1 septum site-determining protein MinC -
  ACHGMI_RS16240 mreD 2947613..2948131 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  ACHGMI_RS16245 mreC 2948128..2949000 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ACHGMI_RS16250 mreB 2949031..2950044 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ACHGMI_RS16255 ysxA/radC 2950136..2950831 (-) 696 WP_041351757.1 RadC family protein Machinery gene
  ACHGMI_RS16260 maf 2950868..2951437 (-) 570 WP_017697539.1 Maf family nucleotide pyrophosphatase -
  ACHGMI_RS16265 spoIIB 2951590..2952588 (-) 999 WP_017697540.1 stage II sporulation protein SpoIIB -
  ACHGMI_RS16270 comC 2952722..2953468 (-) 747 WP_026113741.1 prepilin peptidase Machinery gene
  ACHGMI_RS16275 folC 2953608..2954900 (-) 1293 WP_003229640.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26174.49 Da        Isoelectric Point: 7.9290

>NTDB_id=953734 ACHGMI_RS16255 WP_041351757.1 2950136..2950831(-) (ysxA/radC) [Bacillus subtilis strain AKPS2]
MVIHDLPLKLKDFPMREKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=953734 ACHGMI_RS16255 WP_041351757.1 2950136..2950831(-) (ysxA/radC) [Bacillus subtilis strain AKPS2]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAGAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTGGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424