Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WHP61_RS08645 Genome accession   NZ_CP148214
Coordinates   1620846..1621796 (+) Length   316 a.a.
NCBI ID   WP_002872238.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0059     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1601053..1634782 1620846..1621796 within 0


Gene organization within MGE regions


Location: 1601053..1634782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP61_RS08550 (WHP61_08550) pglI 1601053..1601982 (-) 930 WP_070289983.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  WHP61_RS08555 (WHP61_08555) pglH 1601975..1603054 (-) 1080 WP_079463203.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  WHP61_RS08560 (WHP61_08560) pglK 1603051..1604745 (-) 1695 WP_010790902.1 ABC-type lipopolysaccharide transporter PglK -
  WHP61_RS08565 (WHP61_08565) galE 1604739..1605725 (-) 987 WP_070289985.1 UDP-glucose 4-epimerase GalE -
  WHP61_RS08570 (WHP61_08570) - 1605783..1606577 (-) 795 WP_070289987.1 3'-5' exonuclease -
  WHP61_RS08575 (WHP61_08575) waaC 1606643..1607671 (+) 1029 WP_218991345.1 lipopolysaccharide heptosyltransferase I -
  WHP61_RS08580 (WHP61_08580) htrB 1607661..1608548 (+) 888 WP_214137181.1 lipid A biosynthesis lauroyl acyltransferase -
  WHP61_RS08585 (WHP61_08585) - 1608545..1610095 (+) 1551 WP_100609518.1 glycosyltransferase -
  WHP61_RS08590 (WHP61_08590) - 1610064..1610951 (-) 888 WP_100609520.1 glycosyltransferase family 2 protein -
  WHP61_RS08595 (WHP61_08595) - 1610944..1612152 (-) 1209 WP_002873964.1 glycosyltransferase family 2 protein -
  WHP61_RS08600 (WHP61_08600) - 1612230..1613111 (-) 882 WP_314725366.1 glycosyltransferase family 2 protein -
  WHP61_RS08605 (WHP61_08605) - 1613098..1613187 (-) 90 WP_002873960.1 glycosyltransferase -
  WHP61_RS08610 (WHP61_08610) - 1613371..1614423 (-) 1053 WP_079462092.1 glycosyltransferase family 2 protein -
  WHP61_RS08615 (WHP61_08615) - 1614420..1615469 (-) 1050 WP_052781716.1 glycosyltransferase -
  WHP61_RS08620 (WHP61_08620) glf 1615552..1616661 (-) 1110 WP_002873541.1 UDP-galactopyranose mutase -
  WHP61_RS08625 (WHP61_08625) galE 1616663..1617637 (-) 975 WP_100609522.1 UDP-glucose 4-epimerase GalE -
  WHP61_RS08630 (WHP61_08630) - 1617634..1618933 (-) 1300 Protein_1670 UDP-glucose/GDP-mannose dehydrogenase family protein -
  WHP61_RS08635 (WHP61_08635) - 1618939..1619895 (-) 957 WP_002873538.1 UDP-glucuronic acid decarboxylase family protein -
  WHP61_RS08640 (WHP61_08640) - 1619966..1620787 (-) 822 WP_002873537.1 glycosyltransferase family 2 protein -
  WHP61_RS08645 (WHP61_08645) waaF 1620846..1621796 (+) 951 WP_002872238.1 lipopolysaccharide heptosyltransferase II Regulator
  WHP61_RS08650 (WHP61_08650) - 1621782..1622546 (-) 765 WP_002872239.1 glycosyltransferase family 25 protein -
  WHP61_RS08655 (WHP61_08655) gmhA 1622546..1623106 (-) 561 WP_002842583.1 D-sedoheptulose 7-phosphate isomerase -
  WHP61_RS08660 (WHP61_08660) rfaE1 1623103..1624488 (-) 1386 WP_070290007.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  WHP61_RS08665 (WHP61_08665) rfaD 1624481..1625434 (-) 954 WP_002853798.1 ADP-glyceromanno-heptose 6-epimerase -
  WHP61_RS08670 (WHP61_08670) gmhB 1625435..1625995 (-) 561 WP_002853963.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  WHP61_RS08675 (WHP61_08675) - 1626077..1626379 (+) 303 WP_002852762.1 cytochrome c -
  WHP61_RS08680 (WHP61_08680) ccoS 1626402..1626608 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  WHP61_RS08685 (WHP61_08685) - 1626605..1628962 (-) 2358 WP_079742628.1 heavy metal translocating P-type ATPase -
  WHP61_RS08690 (WHP61_08690) rho 1629071..1630369 (+) 1299 WP_070290009.1 transcription termination factor Rho -
  WHP61_RS08695 (WHP61_08695) dnaX 1630373..1631899 (+) 1527 WP_070290010.1 DNA polymerase III subunit gamma/tau -
  WHP61_RS08700 (WHP61_08700) - 1631896..1632417 (-) 522 Protein_1684 DUF2165 family protein -
  WHP61_RS08705 (WHP61_08705) copA 1632489..1634588 (-) 2100 WP_002875419.1 copper-translocating P-type ATPase CopA -
  WHP61_RS08710 (WHP61_08710) - 1634588..1634782 (-) 195 WP_002852760.1 cation transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36305.91 Da        Isoelectric Point: 10.3316

>NTDB_id=952812 WHP61_RS08645 WP_002872238.1 1620846..1621796(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0059]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLGIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=952812 WHP61_RS08645 WP_002872238.1 1620846..1621796(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0059]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACGAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGGCATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCACGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.994

99.367

0.924