Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   ACH6FP_RS05940 Genome accession   NZ_CP172368
Coordinates   1137278..1138237 (+) Length   319 a.a.
NCBI ID   WP_002852903.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH019     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1132278..1143237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FP_RS05910 (ACH6FP_05910) neuB 1132781..1133821 (+) 1041 WP_002894656.1 N-acetylneuraminate synthase -
  ACH6FP_RS05915 (ACH6FP_05915) neuC 1133818..1134936 (+) 1119 WP_395766296.1 UDP-N-acetylglucosamine 2-epimerase -
  ACH6FP_RS05920 (ACH6FP_05920) - 1134933..1135598 (+) 666 WP_002894653.1 cytidylyltransferase domain-containing protein -
  ACH6FP_RS05925 (ACH6FP_05925) - 1135586..1135759 (+) 174 WP_002896733.1 hypothetical protein -
  ACH6FP_RS05930 (ACH6FP_05930) - 1135801..1136415 (+) 615 WP_002926085.1 CatB-related O-acetyltransferase -
  ACH6FP_RS05935 (ACH6FP_05935) waaV 1136407..1137219 (-) 813 WP_002878817.1 glycosyltransferase family 2 protein -
  ACH6FP_RS05940 (ACH6FP_05940) waaF 1137278..1138237 (+) 960 WP_002852903.1 lipopolysaccharide heptosyltransferase II Regulator
  ACH6FP_RS05945 (ACH6FP_05945) gmhA 1138218..1138778 (-) 561 WP_002852775.1 D-sedoheptulose 7-phosphate isomerase -
  ACH6FP_RS05950 (ACH6FP_05950) rfaE1 1138775..1140160 (-) 1386 WP_002852777.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  ACH6FP_RS05955 (ACH6FP_05955) rfaD 1140153..1141106 (-) 954 WP_002852832.1 ADP-glyceromanno-heptose 6-epimerase -
  ACH6FP_RS05960 (ACH6FP_05960) gmhB 1141107..1141667 (-) 561 WP_002878815.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  ACH6FP_RS05965 (ACH6FP_05965) - 1141749..1142051 (+) 303 WP_002852762.1 cytochrome c -
  ACH6FP_RS05970 (ACH6FP_05970) ccoS 1142074..1142280 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36766.44 Da        Isoelectric Point: 10.4054

>NTDB_id=952534 ACH6FP_RS05940 WP_002852903.1 1137278..1138237(+) (waaF) [Campylobacter jejuni strain YH019]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=952534 ACH6FP_RS05940 WP_002852903.1 1137278..1138237(+) (waaF) [Campylobacter jejuni strain YH019]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTATAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAAATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.984

100

0.95