Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   WHL51_RS01915 Genome accession   NZ_CP148102
Coordinates   358876..359325 (-) Length   149 a.a.
NCBI ID   WP_136975843.1    Uniprot ID   -
Organism   Bacillus spizizenii str. W23     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 353876..364325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL51_RS01875 - 354284..354411 (+) 128 Protein_340 hypothetical protein -
  WHL51_RS01880 - 354408..354863 (+) 456 WP_003224877.1 RDD family protein -
  WHL51_RS01885 - 354946..355278 (+) 333 WP_003224878.1 YckD family protein -
  WHL51_RS01890 - 355413..355835 (+) 423 WP_003224879.1 MarR family winged helix-turn-helix transcriptional regulator -
  WHL51_RS01895 - 355823..356164 (+) 342 WP_003224880.1 DUF3147 family protein -
  WHL51_RS01900 - 356184..356912 (+) 729 WP_003224881.1 AAA family ATPase -
  WHL51_RS01905 bglC 356985..358418 (+) 1434 WP_003224917.1 6-phospho-beta-glucosidase -
  WHL51_RS01910 nin/comJ 358455..358853 (-) 399 WP_003224919.1 DNA-entry nuclease inhibitor Regulator
  WHL51_RS01915 nucA/comI 358876..359325 (-) 450 WP_136975843.1 DNA-entry nuclease Machinery gene
  WHL51_RS01920 tlpC 359499..361223 (-) 1725 WP_003224925.1 methyl-accepting chemotaxis protein TlpC -
  WHL51_RS01925 hxlB 361336..361893 (-) 558 WP_003224927.1 6-phospho-3-hexuloisomerase -
  WHL51_RS01930 hxlA 361898..362530 (-) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  WHL51_RS01935 hxlR 362761..363123 (+) 363 WP_003224931.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16392.32 Da        Isoelectric Point: 4.3043

>NTDB_id=950399 WHL51_RS01915 WP_136975843.1 358876..359325(-) (nucA/comI) [Bacillus spizizenii str. W23]
MNITMDIIKTILLVIVVIAAAAVGLIKGDFFSADQKTSQTEEYDETIALPSDRYPETAKHIKDAINEGHSDVCTIDRDGA
EERREQSLKDVPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=950399 WHL51_RS01915 WP_136975843.1 358876..359325(-) (nucA/comI) [Bacillus spizizenii str. W23]
GTGAACATCACGATGGACATCATAAAAACGATACTTCTCGTCATCGTCGTCATAGCAGCTGCAGCTGTCGGCCTGATCAA
GGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACTGAAGAATATGACGAAACAATTGCCCTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAACATATTAAGGATGCGATAAATGAGGGGCACTCTGATGTGTGCACCATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAAGACGTACCGCCAAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCTGCTGACAACCGCGGTGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGACTATCCAGACGGCACAAAGGTTTTATTCACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

93.96

100

0.94