Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   WDW95_RS11260 Genome accession   NZ_CP147857
Coordinates   2249321..2250559 (-) Length   412 a.a.
NCBI ID   WP_167372341.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain APC3967     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2244321..2255559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDW95_RS11240 - 2245326..2245427 (+) 102 Protein_2176 IS5/IS1182 family transposase -
  WDW95_RS11250 - 2247176..2248174 (+) 999 WP_368651575.1 IS5 family transposase -
  WDW95_RS11255 - 2248516..2249265 (+) 750 WP_096039776.1 AraC family transcriptional regulator -
  WDW95_RS11260 eeP 2249321..2250559 (-) 1239 WP_167372341.1 RIP metalloprotease RseP Regulator
  WDW95_RS11265 - 2250664..2251839 (-) 1176 WP_096039778.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WDW95_RS11270 - 2251943..2252737 (-) 795 WP_096039779.1 phosphatidate cytidylyltransferase -
  WDW95_RS11275 - 2252734..2253480 (-) 747 WP_138492298.1 isoprenyl transferase -
  WDW95_RS11280 yajC 2253694..2254050 (-) 357 WP_061774545.1 preprotein translocase subunit YajC -
  WDW95_RS11285 - 2254239..2254985 (+) 747 WP_061774546.1 DUF975 family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45169.67 Da        Isoelectric Point: 6.7654

>NTDB_id=949017 WDW95_RS11260 WP_167372341.1 2249321..2250559(-) (eeP) [Lactococcus raffinolactis strain APC3967]
MQSLVTFIIIFGIIVCVHEYGHLFFAKKSGILVREFSIGMGPKIYAHQAKDGTLYTIRMLPLGGYVRMAGWGEDETEIKT
GAPVSLTLDVQNQTVTRINLSDKVQFGQALPMLVTAYDFEKALTITGEVNGEVVTYAVDHDATVVEEDGTELRIAPLDVQ
YQSASLPGRMMTNFAGPLNNFILGVVAFVLVAFMQGGVQDLNTNQITVSDHNLPAYQAGLRTGDKVETVNGVPISDWSSL
SKQIGESDGKAIQVKTDRKTLTITPKKQEKSYIIGITPFLKTGFVDKLTGGLKEAWTSAFAIINALKDLILHPDINKLGG
PVAMYRMSGDAAREGITTVIRFMALLSINLGIFNLIPIPALDGGKIVMNIIEAIRRKPMKQEYESIITLVGVGIMVVLMI
AVTWNDIWRLFR

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=949017 WDW95_RS11260 WP_167372341.1 2249321..2250559(-) (eeP) [Lactococcus raffinolactis strain APC3967]
GTGCAAAGTTTAGTCACATTTATCATCATTTTCGGTATTATTGTCTGTGTCCATGAGTATGGTCACCTGTTTTTTGCTAA
AAAATCAGGGATTTTGGTGCGGGAATTTTCGATTGGTATGGGACCAAAAATCTATGCACATCAAGCTAAAGATGGCACCC
TTTATACGATTAGAATGTTGCCTCTGGGTGGTTATGTTCGCATGGCTGGCTGGGGTGAAGATGAAACTGAGATTAAAACT
GGTGCACCTGTGAGCTTGACATTAGATGTCCAAAATCAGACGGTGACACGTATCAATCTCAGTGATAAAGTGCAGTTTGG
ACAAGCGCTTCCGATGCTTGTCACAGCTTACGACTTCGAAAAGGCTTTAACCATTACCGGCGAGGTCAATGGGGAAGTTG
TGACGTATGCGGTGGATCATGATGCGACGGTTGTTGAGGAAGATGGTACAGAGCTGCGCATTGCGCCTTTAGATGTGCAA
TATCAGAGTGCGAGTCTGCCTGGTAGAATGATGACGAACTTTGCAGGACCGCTCAATAACTTTATTTTGGGCGTGGTGGC
TTTTGTTCTAGTTGCCTTTATGCAAGGTGGCGTGCAAGATTTGAATACCAATCAAATCACGGTGTCTGATCACAATTTAC
CGGCTTATCAGGCTGGTTTACGGACGGGTGATAAAGTTGAGACGGTTAATGGTGTGCCAATTTCTGATTGGTCTAGCTTA
TCAAAGCAAATCGGTGAATCAGATGGTAAGGCCATTCAAGTTAAGACGGACCGCAAAACACTGACGATTACGCCTAAGAA
ACAAGAGAAAAGCTATATTATAGGGATTACACCGTTTTTAAAAACAGGATTCGTAGACAAATTAACAGGTGGTCTGAAAG
AGGCGTGGACATCTGCTTTTGCGATTATTAATGCTTTGAAAGATTTAATTTTACATCCAGATATTAATAAATTAGGTGGA
CCAGTTGCCATGTATCGGATGTCTGGTGATGCGGCGCGTGAAGGTATCACGACGGTTATCAGATTTATGGCACTTCTATC
CATTAACTTAGGAATTTTCAATCTGATTCCGATTCCTGCCCTGGATGGTGGTAAGATTGTCATGAATATCATTGAAGCGA
TTCGTCGTAAACCGATGAAACAAGAATATGAAAGTATCATTACTCTTGTAGGTGTGGGCATCATGGTTGTCTTGATGATT
GCGGTGACTTGGAATGATATTTGGCGGTTGTTTCGGTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(6-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

61.045

100

0.624
  eeP Streptococcus thermophilus LMD-9

60.808

100

0.621