Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   UXR49_RS10055 Genome accession   NZ_CP147831
Coordinates   2054235..2054630 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN140     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2049235..2059630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXR49_RS10030 (UXR49_10030) thiE 2049834..2050475 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  UXR49_RS10035 (UXR49_10035) thiM 2050477..2051268 (-) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  UXR49_RS10040 (UXR49_10040) thiD 2051252..2052082 (-) 831 WP_000594951.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  UXR49_RS10045 (UXR49_10045) tenA 2052075..2052764 (-) 690 WP_000396064.1 thiaminase II -
  UXR49_RS10050 (UXR49_10050) sceD 2053151..2053846 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  UXR49_RS10055 (UXR49_10055) ssb 2054235..2054630 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  UXR49_RS10060 (UXR49_10060) - 2054824..2055264 (+) 441 WP_000846746.1 YwpF-like family protein -
  UXR49_RS10065 (UXR49_10065) fabZ 2055322..2055762 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  UXR49_RS10070 (UXR49_10070) murA 2055796..2057061 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  UXR49_RS10075 (UXR49_10075) - 2057172..2057405 (-) 234 WP_000384523.1 DUF1146 family protein -
  UXR49_RS10080 (UXR49_10080) - 2057537..2057629 (-) 93 WP_031824610.1 hypothetical protein -
  UXR49_RS10085 (UXR49_10085) - 2057965..2058369 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=948867 UXR49_RS10055 WP_000932694.1 2054235..2054630(-) (ssb) [Staphylococcus aureus strain BSN140]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=948867 UXR49_RS10055 WP_000932694.1 2054235..2054630(-) (ssb) [Staphylococcus aureus strain BSN140]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992