Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   WEB81_RS11405 Genome accession   NZ_CP147789
Coordinates   2121379..2122158 (+) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus anthracis strain Sterne-CLR1-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2116379..2127158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WEB81_RS11385 (WEB81_11405) trmFO 2117033..2118337 (+) 1305 WP_003161605.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  WEB81_RS11390 (WEB81_11410) xerC 2118403..2119302 (+) 900 WP_001101226.1 tyrosine recombinase XerC -
  WEB81_RS11395 (WEB81_11415) hslV 2119345..2119887 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  WEB81_RS11400 (WEB81_11420) hslU 2119910..2121301 (+) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  WEB81_RS11405 (WEB81_11425) codY 2121379..2122158 (+) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  WEB81_RS11410 (WEB81_11430) rpsB 2122508..2123209 (+) 702 WP_000111483.1 30S ribosomal protein S2 -
  WEB81_RS11415 (WEB81_11435) tsf 2123313..2124200 (+) 888 WP_001018581.1 translation elongation factor Ts -
  WEB81_RS11420 (WEB81_11440) pyrH 2124267..2124989 (+) 723 WP_000042663.1 UMP kinase -
  WEB81_RS11425 (WEB81_11445) frr 2124992..2125549 (+) 558 WP_000531498.1 ribosome recycling factor -
  WEB81_RS11430 (WEB81_11450) uppS 2125635..2126411 (+) 777 WP_000971303.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=948764 WEB81_RS11405 WP_000421288.1 2121379..2122158(+) (codY) [Bacillus anthracis strain Sterne-CLR1-2]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=948764 WEB81_RS11405 WP_000421288.1 2121379..2122158(+) (codY) [Bacillus anthracis strain Sterne-CLR1-2]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459