Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   ACG3JF_RS04780 Genome accession   NZ_CP171732
Coordinates   973681..976017 (-) Length   778 a.a.
NCBI ID   WP_013793636.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 968681..981017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JF_RS04750 (ACG3JF_04750) rpsR 969516..969755 (-) 240 WP_003102945.1 30S ribosomal protein S18 -
  ACG3JF_RS04755 (ACG3JF_04755) ssb 969844..970341 (-) 498 WP_003103409.1 single-stranded DNA-binding protein Machinery gene
  ACG3JF_RS04760 (ACG3JF_04760) rpsF 970362..970652 (-) 291 WP_003104479.1 30S ribosomal protein S6 -
  ACG3JF_RS04765 (ACG3JF_04765) mutY 971638..972777 (+) 1140 WP_041828679.1 A/G-specific adenine glycosylase -
  ACG3JF_RS04770 (ACG3JF_04770) - 972855..973217 (+) 363 WP_003105722.1 hypothetical protein -
  ACG3JF_RS04775 (ACG3JF_04775) trxA 973259..973573 (-) 315 WP_003102914.1 thioredoxin -
  ACG3JF_RS04780 (ACG3JF_04780) mutS/mutS2 973681..976017 (-) 2337 WP_013793636.1 endonuclease MutS2 Machinery gene
  ACG3JF_RS04785 (ACG3JF_04785) - 976084..976629 (-) 546 WP_013793635.1 CvpA family protein -
  ACG3JF_RS04790 (ACG3JF_04790) zapA 976632..976940 (-) 309 WP_003105645.1 cell division protein ZapA -
  ACG3JF_RS04795 (ACG3JF_04795) rnhC 977059..977973 (+) 915 WP_045407701.1 ribonuclease HIII -
  ACG3JF_RS04800 (ACG3JF_04800) lepB 977982..978575 (+) 594 WP_003103516.1 signal peptidase I -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87671.52 Da        Isoelectric Point: 6.6679

>NTDB_id=948442 ACG3JF_RS04780 WP_013793636.1 973681..976017(-) (mutS/mutS2) [Streptococcus parauberis strain DB-M3]
MDIKILEQLEFQKVKEQFQTYLQTEQGKVELQQLVPTDNPEKIKDYFTEISEMEMIFIENHHFAMGSLRDVNDSLHRLEL
DADLNISELLDIKKLLLVSSEASRFFMNLENVELVALKKLFEKLEIFPQLQGSLQAINDGAFIENFASPELEAIRRKIFN
SEHQIRQSLQDVLKKHADYLSESLIASRNGRSVLPVKNTFRNKIAGVVHDISASGNTVYIEPRALVQLNEEITQLHADER
HEMARILKELSAMVRPHSRALANNAWLLGHLDFVRAKYLYMKEKKATIPTVTADKSVQLLNVRHPLLQKPVPNDLHFSKD
LTVIVITGPNTGGKTIMLKTLGLAQLMGQSGLPILADYGSKIAVFNGIFADIGDEQSIEQSLSTFSSHMTHIVSILDQAT
ADSLVLFDELGAGTDPQEGASLAMAILEELRLKEIKTMATTHYPELKAYGIESEFVENASMEFDSNSLQPTYRFMQGVPG
RSNAFEIARRLGLASHIVTDAQNFTDTDSDVNRIIEKLESQTLESRKRLEHIKEVEQDNLKFNRAVKKLYNEFSHERDKE
MEKVTKEAQEIVDLALAESESILAKLHDKSQLKPHEVIEAKTQLKKLVPQTDLSKNKVLKQAKKLRAARVGDDIIVSAYG
QRGTLINQLKDQKWEAQVGLIKMTLKEDEFTLVKAVEESQKPKKQMVNVIKKAATGSGPRARLDLRGKRYEEAMQELDTF
IDQALVNNMSQVDIIHGIGTGVIREAVTKYLRRNKHVKSFAYAPQNAGGSGCTIVTLG

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=948442 ACG3JF_RS04780 WP_013793636.1 973681..976017(-) (mutS/mutS2) [Streptococcus parauberis strain DB-M3]
ATGGATATAAAAATTTTAGAACAGTTAGAATTTCAAAAGGTTAAAGAACAATTTCAAACCTACCTTCAAACTGAACAAGG
GAAAGTGGAACTCCAACAGCTAGTTCCAACAGACAATCCCGAAAAGATTAAAGATTATTTTACGGAAATTTCAGAAATGG
AGATGATTTTTATTGAGAATCATCATTTTGCCATGGGAAGCTTACGGGATGTTAATGACAGCCTCCACCGCCTTGAGTTG
GATGCTGATTTGAATATTTCGGAACTCTTAGATATCAAAAAACTCTTGCTTGTCTCTTCCGAAGCCAGTCGTTTTTTTAT
GAATTTAGAAAATGTTGAATTGGTTGCCCTAAAAAAATTATTTGAGAAATTAGAAATTTTTCCTCAGTTGCAGGGAAGCC
TGCAAGCCATCAACGATGGGGCCTTCATAGAAAACTTTGCCAGTCCAGAATTGGAAGCCATCCGTCGCAAGATTTTTAAT
AGTGAACACCAAATTCGTCAATCGCTTCAGGATGTGCTCAAGAAACATGCTGACTATCTGTCAGAATCATTGATTGCCAG
TCGGAACGGCCGTAGCGTGCTTCCGGTTAAAAACACCTTTAGAAACAAAATCGCAGGGGTTGTCCACGATATCTCAGCAT
CTGGGAATACAGTCTATATTGAACCACGAGCTTTGGTCCAATTAAATGAAGAAATAACCCAGTTGCATGCTGATGAACGT
CATGAAATGGCACGGATTCTTAAAGAACTCTCAGCCATGGTTCGTCCACATAGTCGTGCTCTTGCCAATAATGCTTGGTT
ACTAGGACATTTAGATTTTGTTCGAGCAAAATATCTTTATATGAAGGAGAAGAAGGCGACTATTCCAACTGTCACTGCTG
ATAAATCAGTGCAATTGTTGAATGTTCGTCATCCTCTCTTGCAAAAGCCAGTTCCTAATGACCTACACTTTTCTAAAGAC
TTAACAGTTATTGTTATTACGGGTCCTAATACGGGTGGTAAGACAATCATGTTAAAAACCCTTGGTTTGGCTCAGTTAAT
GGGACAGTCTGGTTTGCCAATTCTAGCTGACTACGGTTCTAAGATTGCTGTTTTCAATGGAATTTTTGCTGATATTGGCG
ATGAGCAATCGATTGAACAAAGCTTGTCGACCTTCTCTAGTCATATGACCCACATTGTGTCAATTCTTGACCAAGCGACA
GCAGATAGTCTAGTTCTCTTTGATGAACTAGGTGCTGGTACCGATCCGCAAGAAGGTGCTAGCTTAGCGATGGCCATTCT
AGAAGAACTTCGCTTGAAAGAAATCAAGACCATGGCGACGACCCATTATCCTGAGTTGAAAGCTTACGGGATTGAGTCGG
AGTTTGTTGAAAATGCTAGTATGGAGTTTGATAGTAATAGTCTTCAGCCAACCTATCGTTTTATGCAAGGCGTGCCTGGT
CGTTCTAATGCTTTTGAAATTGCAAGACGGTTGGGCCTAGCCAGTCATATTGTGACGGACGCTCAGAATTTTACTGATAC
GGATAGTGACGTCAATCGGATTATTGAAAAGTTAGAAAGTCAGACTTTGGAGAGTCGGAAACGTCTTGAACATATTAAAG
AGGTCGAGCAGGATAACCTTAAGTTCAATCGTGCTGTTAAAAAGCTGTATAATGAGTTTTCTCATGAGCGTGATAAGGAA
ATGGAAAAGGTTACTAAAGAGGCGCAAGAGATTGTTGATTTGGCCTTGGCGGAAAGTGAGTCTATCTTAGCTAAGTTACA
TGACAAGTCGCAATTGAAACCACATGAAGTCATTGAAGCTAAGACACAATTGAAAAAGTTAGTACCTCAAACTGATTTAT
CCAAAAATAAAGTTTTGAAACAGGCTAAGAAGTTAAGAGCTGCGCGTGTTGGTGATGATATCATTGTTTCTGCATATGGT
CAACGTGGTACTTTAATTAATCAATTAAAAGATCAAAAATGGGAAGCACAAGTGGGGTTAATTAAAATGACCCTCAAAGA
GGATGAATTTACCTTGGTTAAGGCTGTTGAAGAAAGCCAGAAACCTAAAAAACAAATGGTTAATGTCATTAAGAAAGCAG
CAACAGGTTCTGGACCTAGAGCCCGTCTTGACTTACGTGGCAAACGTTATGAAGAAGCCATGCAAGAGCTGGATACCTTT
ATTGACCAAGCTTTAGTTAATAACATGAGTCAAGTTGATATCATTCATGGGATTGGTACTGGGGTTATTCGTGAAGCAGT
TACTAAATATTTGAGACGCAACAAACATGTTAAGAGTTTTGCTTACGCTCCGCAAAATGCGGGAGGGTCAGGTTGTACAA
TTGTGACCTTGGGTTAG

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(324-505)

Smr domain (Smr)

(703-777)

MutS2 and Smr-associated SH3 domain (MSSS)

(630-669)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.29

100

0.398