Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   ACG3JF_RS00250 Genome accession   NZ_CP171732
Coordinates   48185..51448 (+) Length   1087 a.a.
NCBI ID   WP_045407189.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 43185..56448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JF_RS00225 (ACG3JF_00225) - 44544..44789 (+) 246 WP_238570159.1 PfkB family carbohydrate kinase -
  ACG3JF_RS00230 (ACG3JF_00230) - 44862..45227 (+) 366 WP_003106515.1 OsmC family protein -
  ACG3JF_RS00235 (ACG3JF_00235) - 45280..46353 (+) 1074 WP_045407166.1 ABC transporter permease -
  ACG3JF_RS00240 (ACG3JF_00240) - 46362..47030 (+) 669 WP_003106523.1 ABC transporter ATP-binding protein -
  ACG3JF_RS00245 (ACG3JF_00245) - 47053..47997 (-) 945 WP_003106525.1 neutral zinc metallopeptidase -
  ACG3JF_RS00250 (ACG3JF_00250) rexB 48185..51448 (+) 3264 WP_045407189.1 ATP-dependent nuclease subunit B Machinery gene
  ACG3JF_RS00255 (ACG3JF_00255) rexA 51438..55061 (+) 3624 WP_394714117.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ACG3JF_RS00260 (ACG3JF_00260) - 55188..56318 (+) 1131 WP_013793808.1 aminotransferase -

Sequence

Protein


Download         Length: 1087 a.a.        Molecular weight: 125593.17 Da        Isoelectric Point: 4.8263

>NTDB_id=948401 ACG3JF_RS00250 WP_045407189.1 48185..51448(+) (rexB) [Streptococcus parauberis strain DB-M3]
MRLLYTDINNSLTQILVNHAQDYAQTGSKVFYIAPNSLSFEKERSVLELLDREASFDITITRFAQLARYFTLDIDNHPNT
LSDAALVMVIYRSIMQLTEDDLSVYSQLRADLTFVEQLKDLYKELKISNLSVFDISFENERKAHDLITIFTKIEEVLQAE
SLVQENPLNSLTDHIIQGHLDQELSTTVLVIDGFTRFSAEEELLVAALNDKCQEVVIGTYISKKAQAKSYIEGNLYQASL
DFMRDLSGHFQAKMEYVTSQQSFHEEFGLLSELLEAEADFTQTDKMLPAQARERIHIWQSLNQKEELEHIAKAIRQKLYQ
GHRYKDILVLLGDVEAYQAQIGPVFDKYEIPYYLGRSEAILHHPLVQFVESLERCRSYNWRREDIVNLLKSGLFGHFEKD
WVDQFEAYVEFADINGYTKFSRPFEVNSTDGNNHFRFDLEIVNQVREFSFSNLAQLFKSQKQKGLSLLEKLMTLLNAVDL
PKNFQEMMTVQDENVQERDQEVWKTFVSILEDFQLVFANEKLTLDQTLSLLKMAMQAANYRAVPATLDVVTVKSYDLVEP
HSKPFVMALGLTQNNFPKKTKNTSLISDQERSQTNEDQDYFHRFDLASQDNAKKNHFTALSLFNAATEELLLSYPLMLNE
SSEDMSTYLKSVHQYGILIEEKGKNSLSRTDLDIGNYKSLLSQLVEINRGAIEGELQEEDKNFWTVMLRYLKKRLANENL
QFPQAKNHLETKAISEEVMSLRYPEQKPISLSTSALTVFFDNQYKYFLQYVLGLQELQTIHPDARQHGTYLHKVFETIMG
DHRPIDFDQKVEDALNVTRQNNQFKHFYLEDAQGRYSLQVLEDIAKSTAGILKLNQNLKVLSQEEAFELPITQSLLVKGK
IDRIDQLVDDSIGIVDYKSSANKFDIGRFYNGLNSQLVTYLAALREKAAAMSTEEKAISIFGAMYLHLQDPKLDLKDFKQ
LDDKLVEEVYKDLTYKGIFLEDEKEKLSDGSYQTKNNLYSQEEVNQLVAFNQFLYEEAEGLIRRGHFLINPYTEDGKTVK
GDQLKAITRFESDLDMGQARQLVTLPTREKREGFLTMMKKEVSPNEL

Nucleotide


Download         Length: 3264 bp        

>NTDB_id=948401 ACG3JF_RS00250 WP_045407189.1 48185..51448(+) (rexB) [Streptococcus parauberis strain DB-M3]
ATGAGATTACTATATACTGATATAAATAATTCTTTAACACAGATTCTAGTCAACCATGCTCAAGATTATGCACAAACTGG
TAGCAAGGTTTTTTATATTGCTCCAAACTCATTATCTTTTGAAAAGGAACGATCGGTCCTAGAATTACTTGATAGAGAAG
CCTCGTTTGATATTACGATTACTCGATTTGCTCAATTGGCTCGTTATTTTACACTTGATATTGATAATCATCCTAATACA
TTGTCTGACGCAGCATTAGTGATGGTGATTTACAGAAGTATTATGCAACTTACAGAGGATGATTTATCTGTTTATAGTCA
ATTGAGAGCTGACTTAACCTTTGTCGAACAGTTAAAAGACCTTTATAAAGAATTAAAAATTTCAAATTTATCTGTATTCG
ATATTTCTTTTGAAAACGAACGTAAAGCACATGATTTAATTACTATTTTCACAAAAATTGAAGAAGTACTGCAAGCAGAA
TCCTTAGTTCAAGAGAATCCTCTTAATTCTCTAACTGACCATATAATACAAGGCCATTTAGACCAAGAGTTATCGACAAC
TGTGCTTGTTATTGATGGCTTTACCCGTTTTTCTGCAGAAGAAGAATTGTTAGTTGCAGCCTTGAACGATAAGTGTCAAG
AAGTCGTGATTGGAACCTACATCAGTAAAAAAGCACAAGCCAAATCATATATTGAAGGAAATCTTTATCAAGCCAGTTTA
GATTTTATGAGGGACTTATCTGGTCATTTTCAGGCTAAGATGGAGTATGTTACTAGTCAACAATCATTTCATGAAGAGTT
TGGTCTCTTAAGTGAATTATTGGAGGCTGAAGCGGACTTTACTCAGACCGACAAAATGTTGCCAGCGCAAGCTCGAGAGC
GGATTCATATCTGGCAATCGCTCAATCAAAAAGAGGAACTTGAGCATATCGCCAAAGCTATTCGCCAAAAGTTGTATCAG
GGTCATCGCTATAAGGACATTTTAGTTCTGTTAGGCGATGTTGAGGCTTATCAGGCGCAAATTGGTCCCGTTTTTGATAA
GTATGAGATTCCATATTATTTAGGTCGCTCGGAGGCGATTTTACATCATCCTTTGGTTCAGTTTGTAGAATCTTTGGAGA
GATGTCGTTCCTATAATTGGCGTCGGGAGGACATAGTTAACCTTTTGAAATCAGGGCTCTTTGGACATTTTGAGAAAGAC
TGGGTTGATCAGTTTGAAGCTTATGTTGAATTTGCTGATATTAATGGTTACACCAAGTTTTCACGTCCATTTGAGGTAAA
CTCAACAGATGGCAATAATCATTTTCGTTTTGATTTGGAAATAGTGAACCAGGTCAGAGAGTTTTCCTTTAGTAATTTAG
CCCAGTTATTCAAAAGTCAGAAGCAAAAAGGGCTGTCGCTTCTCGAGAAACTAATGACACTCTTAAATGCAGTCGACTTG
CCGAAGAACTTTCAAGAGATGATGACAGTGCAAGATGAAAATGTACAAGAGCGTGATCAGGAAGTCTGGAAAACCTTCGT
ATCTATTCTAGAGGATTTCCAACTAGTCTTTGCAAATGAAAAGTTGACTTTAGATCAAACCTTATCCCTTTTGAAAATGG
CTATGCAAGCTGCTAATTACCGTGCAGTTCCTGCAACATTAGATGTGGTCACTGTTAAATCTTATGATCTAGTAGAACCT
CACAGTAAGCCCTTTGTAATGGCTTTAGGATTGACTCAAAATAATTTTCCTAAGAAGACAAAAAATACCAGTCTTATTTC
TGATCAAGAAAGAAGTCAAACTAATGAAGATCAGGATTATTTCCATCGATTTGACCTTGCAAGTCAGGATAATGCCAAAA
AGAATCATTTTACGGCCTTATCATTGTTTAATGCAGCAACAGAAGAATTACTTTTAAGCTATCCGCTGATGTTAAATGAG
TCCTCTGAGGATATGTCTACTTATCTGAAATCAGTTCATCAATATGGTATTCTGATTGAAGAAAAAGGGAAAAATAGTCT
GTCACGAACTGACTTAGATATTGGTAACTATAAGTCCTTGTTATCACAACTCGTTGAAATAAATCGTGGTGCTATTGAAG
GTGAATTGCAAGAAGAAGATAAAAATTTCTGGACAGTTATGCTTCGTTACTTAAAGAAACGCCTTGCAAATGAAAATCTT
CAGTTTCCACAAGCAAAGAATCATTTGGAAACTAAGGCTATTAGTGAAGAAGTCATGTCATTAAGGTATCCTGAGCAAAA
ACCAATATCACTTTCAACATCAGCCTTGACTGTCTTTTTTGATAATCAATACAAATATTTCTTGCAATATGTTCTTGGTC
TGCAAGAATTGCAAACTATCCATCCAGATGCTCGCCAACACGGTACCTATTTACACAAAGTATTTGAAACAATTATGGGC
GATCATCGTCCAATTGATTTTGACCAGAAGGTAGAGGATGCCTTAAATGTAACACGTCAAAACAATCAATTTAAACATTT
TTATTTGGAAGATGCGCAGGGCAGATACAGTTTACAAGTTTTAGAAGATATCGCAAAATCAACTGCAGGCATTCTAAAAC
TTAATCAGAATCTTAAAGTCTTAAGTCAGGAAGAAGCATTTGAATTGCCAATTACTCAGTCCTTATTAGTCAAAGGTAAA
ATTGATAGGATTGATCAACTTGTTGATGATAGTATTGGTATTGTTGATTACAAGTCAAGTGCTAACAAATTTGACATCGG
CCGTTTTTACAATGGCTTAAATTCACAGCTAGTCACCTATTTAGCAGCCTTAAGAGAAAAAGCGGCAGCCATGTCGACAG
AAGAAAAAGCGATTTCTATTTTTGGTGCTATGTACTTACATTTACAAGATCCTAAATTAGATTTAAAAGATTTTAAACAG
TTGGATGATAAATTAGTTGAGGAAGTATACAAAGATTTAACTTATAAAGGTATTTTCTTAGAAGATGAAAAAGAGAAGCT
TTCAGACGGTTCCTACCAAACTAAAAATAACTTGTATAGCCAAGAAGAAGTAAATCAATTAGTCGCCTTTAATCAATTTC
TCTATGAGGAAGCTGAAGGTTTGATTCGTAGAGGTCATTTCTTGATTAATCCATATACAGAGGATGGAAAAACTGTTAAG
GGAGATCAACTAAAAGCAATTACAAGGTTTGAATCTGATCTTGATATGGGTCAAGCTCGTCAATTAGTGACCCTTCCGAC
TAGAGAAAAAAGGGAAGGATTTTTAACCATGATGAAAAAGGAGGTGAGTCCAAATGAACTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(750-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

40.888

99.448

0.407