Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACF0HW_RS05625 Genome accession   NZ_CP171208
Coordinates   1101222..1101917 (+) Length   231 a.a.
NCBI ID   WP_007408165.1    Uniprot ID   A7Z793
Organism   Bacillus amyloliquefaciens strain HN11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1096222..1106917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HW_RS05605 - 1097168..1098460 (+) 1293 WP_012118108.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ACF0HW_RS05610 comC 1098600..1099352 (+) 753 WP_012118107.1 A24 family peptidase Machinery gene
  ACF0HW_RS05615 - 1099479..1100480 (+) 1002 WP_012118106.1 SPOR domain-containing protein -
  ACF0HW_RS05620 - 1100621..1101190 (+) 570 WP_012118105.1 nucleoside triphosphate pyrophosphatase -
  ACF0HW_RS05625 ysxA/radC 1101222..1101917 (+) 696 WP_007408165.1 DNA repair protein RadC Machinery gene
  ACF0HW_RS05630 mreB 1102009..1103022 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ACF0HW_RS05635 mreC 1103053..1103916 (+) 864 WP_007408166.1 rod shape-determining protein MreC -
  ACF0HW_RS05640 mreD 1103913..1104431 (+) 519 WP_007408167.1 rod shape-determining protein MreD -
  ACF0HW_RS05645 minC 1104485..1105165 (+) 681 WP_012118104.1 septum site-determining protein MinC -
  ACF0HW_RS05650 minD 1105168..1105971 (+) 804 WP_016938784.1 septum site-determining protein MinD -
  ACF0HW_RS05655 - 1106099..1106902 (+) 804 WP_007408168.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26080.30 Da        Isoelectric Point: 9.1909

>NTDB_id=945658 ACF0HW_RS05625 WP_007408165.1 1101222..1101917(+) (ysxA/radC) [Bacillus amyloliquefaciens strain HN11]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=945658 ACF0HW_RS05625 WP_007408165.1 1101222..1101917(+) (ysxA/radC) [Bacillus amyloliquefaciens strain HN11]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGTGTTCACAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429