Detailed information NTG0094562

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: R8588_RS05710
• Genome accession: NZ_AP028401
• Coordinates: 1087604..1088563 (+)
• Length: 319 a.a.
• NCBI ID: WP_002869618.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain BCH-11527
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1082604..1093563

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8588_RS05685	-	1082952..1083975 (-)	1024	Protein_1099	hypothetical protein	-
R8588_RS05690 (B11527_11200)	-	1084046..1084819 (+)	774	WP_002869611.1	glycosyltransferase family 25 protein	-
R8588_RS05695 (B11527_11210)	wlaTB	1084812..1085768 (+)	957	WP_002869613.1	class E lipooligosaccharide biosynthesis protein WlaTB	-
R8588_RS05700 (B11527_11220)	yibB	1085765..1086724 (+)	960	WP_002869615.1	protein YibB	-
R8588_RS05705 (B11527_11230)	waaV	1086727..1087545 (-)	819	WP_002869617.1	glycosyltransferase family 2 protein	-
R8588_RS05710 (B11527_11240)	waaF	1087604..1088563 (+)	960	WP_002869618.1	lipopolysaccharide heptosyltransferase II	Regulator
R8588_RS05715 (B11527_11250)	gmhA	1088544..1089104 (-)	561	WP_002869619.1	D-sedoheptulose 7-phosphate isomerase	-
R8588_RS05720 (B11527_11260)	rfaE1	1089101..1090486 (-)	1386	WP_002867399.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
R8588_RS05725 (B11527_11270)	rfaD	1090479..1091432 (-)	954	WP_002867398.1	ADP-glyceromanno-heptose 6-epimerase	-
R8588_RS05730 (B11527_11280)	gmhB	1091433..1091994 (-)	562	Protein_1108	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
R8588_RS05735 (B11527_11290)	-	1092075..1092377 (+)	303	WP_002852762.1	c-type cytochrome	-
R8588_RS05740 (B11527_11300)	ccoS	1092400..1092606 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36850.61 Da
• Isoelectric Point: 10.3923

>NTDB_id=94562 R8588_RS05710 WP_002869618.1 1087604..1088563(+) (waaF) [Campylobacter jejuni strain BCH-11527]
MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNRKKILGLNPGA
SFGSAKRWDASYFAKVALNFNQSHEILIFGAGKVEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEAKNLLKNPHL

Nucleotide

• Length: 960 bp

>NTDB_id=94562 R8588_RS05710 WP_002869618.1 1087604..1088563(+) (waaF) [Campylobacter jejuni strain BCH-11527]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGTTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATCGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTAGCTTTAAATTTCAACCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGTCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATTGCTTTTTGTGATCTTTTCATAACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAAAAATTTACTTAAAAACCCTCATCTATAA

Domains

Predicted by InterProScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (96-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.357	100	0.944