Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WAX88_RS13520 Genome accession   NZ_CP146973
Coordinates   2936310..2937842 (+) Length   510 a.a.
NCBI ID   WP_106142304.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain WMD-P3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2931310..2942842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAX88_RS13505 (WAX88_13505) - 2932895..2933824 (-) 930 WP_341508844.1 branched-chain amino acid transaminase -
  WAX88_RS13510 (WAX88_13510) ilvM 2933864..2934121 (-) 258 WP_036764608.1 acetolactate synthase 2 small subunit -
  WAX88_RS13515 (WAX88_13515) ilvG 2934124..2935770 (-) 1647 WP_341508845.1 acetolactate synthase 2 catalytic subunit -
  WAX88_RS13520 (WAX88_13520) comM 2936310..2937842 (+) 1533 WP_106142304.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WAX88_RS13525 (WAX88_13525) - 2937934..2938533 (-) 600 WP_370466075.1 thiol:disulfide interchange protein DsbA/DsbL -
  WAX88_RS13530 (WAX88_13530) - 2938623..2939612 (-) 990 WP_068945793.1 serine/threonine protein kinase -
  WAX88_RS13535 (WAX88_13535) ccoG 2939655..2940992 (-) 1338 WP_341508846.1 cytochrome c oxidase accessory protein CcoG -
  WAX88_RS13540 (WAX88_13540) - 2941181..2941447 (-) 267 WP_005302176.1 YihD family protein -
  WAX88_RS13545 (WAX88_13545) - 2941623..2941796 (-) 174 WP_005302173.1 hypothetical protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55151.42 Da        Isoelectric Point: 8.2787

>NTDB_id=945258 WAX88_RS13520 WP_106142304.1 2936310..2937842(+) (comM) [Photobacterium damselae subsp. damselae strain WMD-P3]
MSLAIVHSRACVGVQAPAVTVEVHLSNGMPSFTLVGLPETTVKEAKDRVRSAIFNANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPAESLHKYEFLGELALSGQLRPVKGALPAALAALKAKRCLIVPDRNGDQVALVGEKQHKSAPDL
IQVCAHLLGQQSLSLRFQTKPDDDSLDLTQGRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPP
MSHDEALETAAVASLTQQSIHQGNWLQRPLRAPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLRE
PLESGEIVISRATSKATFPANFQLIGALNPSPTGFYEGAQTRTNPQVILRYLSKLSGPLLDRFDMSIEIPALPKGTLAQG
GERGESTPVIKTRVNQARTLMDQRAGKVNARLSTRELDKHCALAREDAEFLENALHQLGLSIRAYHRIIKVARTIADLSN
CEQIERAHLAEALGYRAMDRLLKQLTAQAI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=945258 WAX88_RS13520 WP_106142304.1 2936310..2937842(+) (comM) [Photobacterium damselae subsp. damselae strain WMD-P3]
ATGTCATTGGCCATTGTGCATAGCCGGGCTTGCGTTGGGGTACAAGCTCCAGCAGTAACTGTTGAAGTTCATTTAAGTAA
TGGAATGCCCAGTTTTACTCTGGTGGGTTTACCTGAGACAACGGTAAAAGAGGCCAAAGATCGGGTTCGAAGTGCCATTT
TTAATGCCAATTTTGAGTTTCCCTCTCGGCGAATTACCGTCAATTTAGCTCCCGCTGATTTGCCTAAAGAAGGGGGCCGA
TTTGACTTACCAATCGCGCTTGGAATTTTAGCGGCTTCAGGACAAATACCCGCAGAATCACTGCATAAATATGAATTTTT
AGGGGAGTTGGCCTTATCGGGGCAATTGCGCCCGGTAAAGGGTGCACTGCCAGCTGCTCTTGCTGCATTAAAGGCGAAAA
GGTGCTTGATTGTTCCTGATCGTAATGGCGATCAAGTGGCATTAGTAGGCGAAAAACAACATAAGTCAGCGCCTGATTTG
ATCCAAGTTTGCGCTCACCTATTAGGACAGCAAAGTTTATCTTTACGCTTTCAAACAAAACCCGATGATGATTCGTTAGA
TCTGACTCAGGGGCGAGATATGCAAGATATTATTGGTCAGCAGCAAGGTAAGCGGGCATTGGAAATTGCAGCTGCTGGTG
GCCATAATCTTCTATTTCTTGGGCCGCCAGGAACGGGAAAAACCATGTTAGCCTCTCGGTTATGTGATTTATTACCTCCC
ATGAGCCATGATGAGGCGTTAGAAACTGCAGCTGTTGCCTCGCTGACTCAGCAGAGCATTCATCAAGGCAATTGGTTACA
ACGACCGCTACGTGCACCTCATCATTCAAGCTCTATGGCTGCCTTAGTTGGAGGTGGTTCAATTCCAAGGCCGGGCGAGA
TCTCTTTGGCGCATAACGGCATTCTTTTTTTAGATGAAATGCCCGAATTTGAGCGTAAGGTTTTGGACTCATTACGTGAA
CCTTTAGAGTCGGGAGAGATTGTGATTTCTCGGGCAACCAGTAAAGCAACCTTTCCGGCAAATTTTCAATTGATTGGAGC
GCTAAATCCGAGTCCAACAGGGTTTTATGAAGGCGCACAAACTCGAACTAATCCTCAAGTTATTTTGCGCTATCTCAGTA
AACTCTCTGGCCCGCTGCTTGATAGGTTTGATATGTCGATTGAGATCCCAGCTCTGCCGAAAGGTACTTTAGCTCAAGGT
GGTGAGCGCGGTGAGAGTACTCCTGTGATTAAAACGCGAGTTAATCAGGCGCGAACCTTAATGGATCAGCGAGCAGGAAA
AGTGAATGCTCGACTTTCGACTCGGGAGTTAGATAAACATTGCGCTCTGGCTCGAGAAGATGCGGAGTTTCTTGAAAATG
CACTGCATCAGTTGGGGCTATCGATTCGTGCGTACCACCGTATTATTAAGGTGGCACGAACCATTGCCGATTTAAGTAAT
TGTGAGCAGATAGAGCGAGCGCATTTAGCTGAAGCGTTAGGATATCGAGCGATGGATCGGTTATTGAAGCAGTTAACGGC
TCAAGCGATATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.863

100

0.769
  comM Vibrio cholerae strain A1552

76.471

100

0.765
  comM Glaesserella parasuis strain SC1401

63.333

100

0.633
  comM Haemophilus influenzae Rd KW20

62.722

99.412

0.624
  comM Legionella pneumophila str. Paris

49.699

97.843

0.486
  comM Legionella pneumophila strain ERS1305867

49.699

97.843

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.216

0.427