Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   ACFXAA_RS00445 Genome accession   NZ_CP170717
Coordinates   93951..95441 (+) Length   496 a.a.
NCBI ID   WP_060674346.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 88951..100441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS00425 (ACFXAA_00425) serA 89603..91180 (-) 1578 WP_007409437.1 phosphoglycerate dehydrogenase -
  ACFXAA_RS00430 (ACFXAA_00430) - 91669..92241 (+) 573 WP_015417737.1 ECF transporter S component -
  ACFXAA_RS00435 (ACFXAA_00435) - 92383..92631 (-) 249 WP_003153403.1 ferredoxin -
  ACFXAA_RS00440 (ACFXAA_00440) - 92900..93958 (+) 1059 WP_060674349.1 helix-turn-helix domain-containing protein -
  ACFXAA_RS00445 (ACFXAA_00445) recS 93951..95441 (+) 1491 WP_060674346.1 ATP-dependent DNA helicase RecQ Machinery gene
  ACFXAA_RS00450 (ACFXAA_00450) - 95456..96043 (+) 588 WP_007409441.1 CPBP family intramembrane glutamic endopeptidase -
  ACFXAA_RS00455 (ACFXAA_00455) - 96021..96815 (+) 795 WP_395135535.1 LysM peptidoglycan-binding domain-containing protein -
  ACFXAA_RS00460 (ACFXAA_00460) - 96884..97342 (+) 459 WP_007409443.1 YpbF family protein -
  ACFXAA_RS00465 (ACFXAA_00465) - 97429..98217 (+) 789 WP_015417733.1 metallophosphoesterase -
  ACFXAA_RS00470 (ACFXAA_00470) - 98369..98953 (+) 585 WP_003153412.1 genetic competence negative regulator -
  ACFXAA_RS00475 (ACFXAA_00475) gudB 99114..100388 (+) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56075.15 Da        Isoelectric Point: 6.2476

>NTDB_id=944971 ACFXAA_RS00445 WP_060674346.1 93951..95441(+) (recS) [Bacillus amyloliquefaciens strain JP5014]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNTEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTSDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIREALLSYFDEPYEPDCQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=944971 ACFXAA_RS00445 WP_060674346.1 93951..95441(+) (recS) [Bacillus amyloliquefaciens strain JP5014]
ATGACTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAAGATACGATCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCGCCGCTCCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATCCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTACTGAACCGTTTGAAAAATGTCCCGGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCAGAATGGGGACATGATTTCAGGCCTGATTACTCGAAGCTCGGGCCTTTCAGGCAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACCGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAACATTCTCCTGGCGGCAGAACATTTGGCTGATAATA
CCGAAAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCGGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGCGA
CAGGATTTTAATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATTTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGACCTGGAAGGCATTCTGGCCGTCATACGGGATGCCGGTACGAGTGATGAGCGAAAGCTTC
GGGACGTTCTGATCAATAAGGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAATCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAACCGTATGAGCCTGATTGTCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGTAAAAATATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGATCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.347

100

0.683