Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ACFXAD_RS18455 Genome accession   NZ_CP170653
Coordinates   3720888..3721322 (-) Length   144 a.a.
NCBI ID   WP_007410180.1    Uniprot ID   A7Z1H0
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3715888..3726322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS18440 (ACFXAD_18440) - 3716490..3717338 (-) 849 WP_041482102.1 diguanylate cyclase domain-containing protein -
  ACFXAD_RS18445 (ACFXAD_18445) - 3717319..3718404 (-) 1086 WP_053573718.1 hypothetical protein -
  ACFXAD_RS18450 (ACFXAD_18450) - 3718638..3720824 (-) 2187 WP_053573740.1 DNA topoisomerase III -
  ACFXAD_RS18455 (ACFXAD_18455) lrpC 3720888..3721322 (-) 435 WP_007410180.1 Lrp/AsnC family transcriptional regulator Machinery gene
  ACFXAD_RS18460 (ACFXAD_18460) - 3721498..3721788 (+) 291 WP_007410179.1 DUF3817 domain-containing protein -
  ACFXAD_RS18465 (ACFXAD_18465) - 3721826..3722635 (-) 810 WP_015416841.1 lipid II flippase Amj family protein -
  ACFXAD_RS18470 (ACFXAD_18470) - 3723135..3723557 (-) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  ACFXAD_RS18475 (ACFXAD_18475) - 3723564..3724187 (-) 624 WP_039062632.1 GNAT family N-acetyltransferase -
  ACFXAD_RS18480 (ACFXAD_18480) - 3724275..3724778 (-) 504 WP_053573719.1 D-lyxose/D-mannose family sugar isomerase -
  ACFXAD_RS18485 (ACFXAD_18485) - 3724791..3725651 (-) 861 WP_053573720.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16492.13 Da        Isoelectric Point: 8.6776

>NTDB_id=944955 ACFXAD_RS18455 WP_007410180.1 3720888..3721322(-) (lrpC) [Bacillus amyloliquefaciens strain JP5011]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKMNADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=944955 ACFXAD_RS18455 WP_007410180.1 3720888..3721322(-) (lrpC) [Bacillus amyloliquefaciens strain JP5011]
ATGAAACTAGATAATGTGGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAACTGGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCCGTCTCCTGCATTGTCGAAGCGACGGTGAAAAACGGGAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
GAACGCGGACAGCCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z1H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80.851

97.917

0.792