Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8902_RS05230 Genome accession   NZ_AP028388
Coordinates   1014408..1014956 (+) Length   182 a.a.
NCBI ID   WP_002854048.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11399     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1009408..1019956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8902_RS05195 (B11399_10130) - 1009599..1010024 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  R8902_RS05200 - 1010089..1010708 (+) 620 Protein_1005 NAD(P)H-dependent oxidoreductase -
  R8902_RS05205 (B11399_10160) - 1010708..1011313 (+) 606 WP_002877740.1 NAD(P)H-dependent oxidoreductase -
  R8902_RS05210 (B11399_10170) pgsA 1011438..1011974 (+) 537 WP_002877743.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8902_RS05215 (B11399_10180) rseP 1011971..1013077 (+) 1107 WP_002877745.1 RIP metalloprotease RseP -
  R8902_RS05220 - 1013070..1013935 (+) 866 Protein_1009 VirK family antimicrobial peptide resistance protein -
  R8902_RS05225 (B11399_10210) rpsF 1014022..1014399 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  R8902_RS05230 (B11399_10220) ssb 1014408..1014956 (+) 549 WP_002854048.1 single-stranded DNA-binding protein Machinery gene
  R8902_RS05235 (B11399_10230) rpsR 1014967..1015227 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8902_RS05240 (B11399_10240) lon 1015287..1017662 (-) 2376 WP_002853487.1 endopeptidase La -
  R8902_RS05245 (B11399_10250) - 1017679..1018326 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  R8902_RS05250 (B11399_10260) fliW 1018487..1018876 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8902_RS05255 (B11399_10270) proC 1018876..1019607 (+) 732 WP_002854026.1 pyrroline-5-carboxylate reductase Machinery gene
  R8902_RS05260 (B11399_10280) ctsT 1019604..1019906 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20626.52 Da        Isoelectric Point: 5.0431

>NTDB_id=94280 R8902_RS05230 WP_002854048.1 1014408..1014956(+) (ssb) [Campylobacter jejuni strain BCH-11399]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=94280 R8902_RS05230 WP_002854048.1 1014408..1014956(+) (ssb) [Campylobacter jejuni strain BCH-11399]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39

Multiple sequence alignment