Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ABUS40_RS08380 Genome accession   NZ_CP169788
Coordinates   1755980..1756681 (+) Length   233 a.a.
NCBI ID   WP_000594579.1    Uniprot ID   A0A0D5YJA0
Organism   Acinetobacter baumannii strain Hv766     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1750980..1761681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS40_RS08345 kdsB 1751503..1752264 (+) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABUS40_RS08350 - 1752276..1753256 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  ABUS40_RS08355 - 1753268..1753609 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  ABUS40_RS08360 - 1753627..1754400 (+) 774 WP_000497300.1 TatD family hydrolase -
  ABUS40_RS08365 - 1754438..1755046 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABUS40_RS08370 - 1755056..1755610 (+) 555 WP_000841373.1 type II secretion system protein -
  ABUS40_RS08375 xcpV 1755600..1755980 (+) 381 WP_000836914.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABUS40_RS08380 xcpW 1755980..1756681 (+) 702 WP_000594579.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABUS40_RS08385 gspK 1756681..1757640 (+) 960 WP_000301478.1 type II secretion system minor pseudopilin GspK -
  ABUS40_RS08390 - 1757870..1758466 (+) 597 WP_000908449.1 6-carboxytetrahydropterin synthase -
  ABUS40_RS08395 ung 1758517..1759230 (+) 714 WP_001177527.1 uracil-DNA glycosylase -
  ABUS40_RS08400 - 1759227..1760351 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  ABUS40_RS08405 tadA 1760358..1760861 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  ABUS40_RS08410 - 1760931..1761374 (+) 444 WP_001246675.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26707.66 Da        Isoelectric Point: 9.5501

>NTDB_id=940545 ABUS40_RS08380 WP_000594579.1 1755980..1756681(+) (xcpW) [Acinetobacter baumannii strain Hv766]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=940545 ABUS40_RS08380 WP_000594579.1 1755980..1756681(+) (xcpW) [Acinetobacter baumannii strain Hv766]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YJA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

98.283

100

0.983