Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6W80_RS00100 Genome accession   NZ_CP145723
Coordinates   19652..20737 (+) Length   361 a.a.
NCBI ID   WP_338545554.1    Uniprot ID   -
Organism   Pseudomonas benzopyrenica strain MLY92     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 14652..25737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6W80_RS00070 (V6W80_00070) - 14673..15032 (+) 360 WP_026083892.1 hypothetical protein -
  V6W80_RS00075 (V6W80_00075) - 15049..15549 (+) 501 WP_338545550.1 polymer-forming cytoskeletal protein -
  V6W80_RS00080 (V6W80_00080) rsmB 15533..16834 (-) 1302 WP_338545551.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  V6W80_RS00085 (V6W80_00085) fmt 16831..17775 (-) 945 WP_338545552.1 methionyl-tRNA formyltransferase -
  V6W80_RS00090 (V6W80_00090) def 17834..18340 (-) 507 WP_338545553.1 peptide deformylase -
  V6W80_RS00095 (V6W80_00095) - 18570..19601 (+) 1032 WP_026083893.1 LysM peptidoglycan-binding domain-containing protein -
  V6W80_RS00100 (V6W80_00100) dprA 19652..20737 (+) 1086 WP_338545554.1 DNA-processing protein DprA Machinery gene
  V6W80_RS00105 (V6W80_00105) - 20802..21356 (+) 555 WP_338545555.1 Sua5/YciO/YrdC/YwlC family protein -
  V6W80_RS00110 (V6W80_00110) - 21358..24741 (-) 3384 WP_338545556.1 PAS domain S-box protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38180.79 Da        Isoelectric Point: 6.7187

>NTDB_id=939719 V6W80_RS00100 WP_338545554.1 19652..20737(+) (dprA) [Pseudomonas benzopyrenica strain MLY92]
MASLSPAELDARLHLHALPELGAVRQRLLLDAFGSASAALSAPASAWRALRLPAVAADARRSPATRERVDQALAWLEDPE
RHLLCLGDERYPALLAEIADPPPLLFVEGRVELLERPQLALVGSRQASAQGLDNARRFAHSLAAAGFCITSGLALGIDGA
AHQGALDAGGGTVAVLGTGLRQLYPRRHLGLARRLLAEGGALVSELPLDCTPQAANFPRRNRIISGLSLGTLVVEASPSS
GSLITARLAAEQGREVFALPGSIHHPGARGCHQLIREGAQLVEGVEHILEALQGWRSLAPVATAAVVEDHPLLRQLAAGP
LNSEELARLCRLSLPEVLVQLTELELEGRVVAQQGSWTRLG

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=939719 V6W80_RS00100 WP_338545554.1 19652..20737(+) (dprA) [Pseudomonas benzopyrenica strain MLY92]
ATGGCCAGCCTCTCCCCTGCCGAGCTGGACGCTCGGCTTCACCTGCATGCCCTGCCGGAGCTCGGTGCCGTGCGCCAGCG
CCTGCTGCTGGATGCCTTTGGCAGCGCCAGCGCCGCCCTCAGTGCCCCCGCCTCGGCCTGGCGCGCCCTGCGCCTGCCGG
CGGTGGCCGCGGACGCCCGCCGCAGCCCCGCGACCCGCGAACGGGTCGACCAGGCCCTGGCCTGGCTGGAGGACCCCGAG
CGCCATCTGCTCTGCCTGGGCGACGAGCGCTATCCGGCGCTGCTCGCCGAGATCGCCGATCCACCGCCGCTGCTGTTCGT
CGAAGGACGGGTCGAGTTGCTCGAACGACCGCAACTGGCCCTGGTCGGCAGCCGCCAGGCCAGTGCCCAGGGACTCGACA
ATGCCCGGCGCTTCGCCCACAGCCTGGCCGCGGCCGGCTTCTGCATCACCAGTGGCCTGGCGCTGGGCATCGATGGCGCG
GCGCACCAGGGTGCGCTGGACGCCGGCGGCGGTACGGTGGCCGTGCTGGGCACCGGCCTCCGGCAGCTCTATCCCCGCCG
TCATCTGGGCCTCGCCCGGCGCCTGCTGGCCGAGGGTGGTGCGCTGGTCTCGGAATTGCCGCTGGACTGCACGCCCCAGG
CCGCCAACTTTCCGCGGCGCAACCGGATCATCAGCGGCCTCAGCCTGGGTACCCTGGTGGTGGAGGCCAGCCCCTCCAGC
GGTTCGCTGATCACCGCGCGGCTGGCCGCCGAGCAGGGCCGCGAGGTGTTCGCCCTGCCCGGCTCCATCCATCATCCCGG
GGCGCGAGGCTGTCATCAGCTGATCCGTGAAGGGGCGCAACTGGTGGAGGGCGTGGAGCATATCCTCGAAGCCCTGCAGG
GCTGGCGCAGCCTGGCCCCGGTCGCCACGGCCGCGGTGGTCGAGGATCACCCCCTGCTGCGGCAGCTGGCCGCCGGACCG
CTCAACAGCGAAGAGTTGGCGCGGCTCTGCCGCCTGTCGTTGCCGGAGGTGCTGGTCCAGCTGACCGAGTTGGAGCTGGA
GGGCCGGGTGGTGGCGCAGCAGGGCAGCTGGACGCGTCTCGGCTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (DprA_WH)

(309-355)

DNA recombination-mediator protein A (DNA_processg_A)

(77-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

47.312

100

0.488
  dprA Vibrio cholerae strain A1552

48.232

86.15

0.416
  dprA Acinetobacter baylyi ADP1

40.793

97.784

0.399
  dprA Acinetobacter baumannii D1279779

38.798

100

0.393
  dprA Neisseria meningitidis MC58

47.797

81.717

0.391
  dprA Neisseria meningitidis strain C311

47.797

81.717

0.391
  dprA Neisseria gonorrhoeae strain FA1090

43.614

88.92

0.388
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.548

98.061

0.388
  dprA Glaesserella parasuis strain SC1401

48.097

80.055

0.385
  dprA Neisseria gonorrhoeae MS11

43.302

88.92

0.385
  dprA Legionella pneumophila strain ERS1305867

46.309

82.548

0.382
  dprA Acinetobacter baumannii strain A118

39.316

97.23

0.382
  dprA Haemophilus influenzae Rd KW20

47.143

77.562

0.366