Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8580_RS05190 Genome accession   NZ_AP028380
Coordinates   1011014..1011565 (+) Length   183 a.a.
NCBI ID   WP_002877747.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10998     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1006014..1016565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8580_RS05155 (B10998_10020) - 1006204..1006629 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  R8580_RS05160 (B10998_10030) - 1006694..1007314 (+) 621 WP_317690483.1 nitroreductase family protein -
  R8580_RS05165 (B10998_10040) - 1007314..1007919 (+) 606 WP_002877740.1 NAD(P)H-dependent oxidoreductase -
  R8580_RS05170 (B10998_10050) pgsA 1008044..1008580 (+) 537 WP_063674697.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8580_RS05175 (B10998_10060) rseP 1008577..1009683 (+) 1107 WP_002877745.1 RIP metalloprotease RseP -
  R8580_RS05180 - 1009676..1010541 (+) 866 Protein_1000 VirK family antimicrobial peptide resistance protein -
  R8580_RS05185 (B10998_10090) rpsF 1010628..1011005 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  R8580_RS05190 (B10998_10100) ssb 1011014..1011565 (+) 552 WP_002877747.1 single-stranded DNA-binding protein Machinery gene
  R8580_RS05195 (B10998_10110) rpsR 1011576..1011836 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8580_RS05200 (B10998_10120) lon 1011897..1014272 (-) 2376 WP_002868636.1 endopeptidase La -
  R8580_RS05205 (B10998_10130) bamD 1014289..1014936 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  R8580_RS05210 (B10998_10140) fliW 1015097..1015486 (+) 390 WP_002877749.1 flagellar assembly protein FliW -
  R8580_RS05215 (B10998_10150) proC 1015486..1016217 (+) 732 WP_002855729.1 pyrroline-5-carboxylate reductase Machinery gene
  R8580_RS05220 (B10998_10160) ctsT 1016214..1016516 (+) 303 WP_002877750.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20770.66 Da        Isoelectric Point: 5.0431

>NTDB_id=93908 R8580_RS05190 WP_002877747.1 1011014..1011565(+) (ssb) [Campylobacter jejuni strain BCH-10998]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=93908 R8580_RS05190 WP_002877747.1 1011014..1011565(+) (ssb) [Campylobacter jejuni strain BCH-10998]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
GGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCCGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372

Multiple sequence alignment