Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   V5G15_RS10375 Genome accession   NZ_CP145090
Coordinates   1977328..1978515 (-) Length   395 a.a.
NCBI ID   WP_004466865.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_A_2024     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1972328..1983515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G15_RS10345 (V5G15_10370) - 1972656..1973405 (-) 750 Protein_2009 opacity family porin -
  V5G15_RS10350 (V5G15_10375) - 1973355..1973501 (+) 147 WP_154236000.1 hypothetical protein -
  V5G15_RS10355 (V5G15_10380) - 1973580..1974124 (-) 545 Protein_2011 IS1595 family transposase -
  V5G15_RS10360 (V5G15_10385) - 1974114..1974242 (-) 129 Protein_2012 phosphomethylpyrimidine synthase ThiC -
  V5G15_RS10365 (V5G15_10390) topA 1974463..1976769 (-) 2307 WP_057321724.1 type I DNA topoisomerase -
  V5G15_RS10370 (V5G15_10395) - 1976841..1977302 (-) 462 WP_003690120.1 DUF494 domain-containing protein -
  V5G15_RS10375 (V5G15_10400) dprA 1977328..1978515 (-) 1188 WP_004466865.1 DNA-processing protein DprA Machinery gene
  V5G15_RS10380 (V5G15_10405) - 1978606..1979883 (-) 1278 WP_003690124.1 sigma-54 dependent transcriptional regulator -
  V5G15_RS10385 (V5G15_10410) - 1979876..1981996 (-) 2121 WP_082284933.1 PAS domain-containing sensor histidine kinase -
  V5G15_RS10390 (V5G15_10415) - 1981996..1982595 (-) 600 WP_003690290.1 DUF4390 domain-containing protein -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41877.93 Da        Isoelectric Point: 6.2394

>NTDB_id=937199 V5G15_RS10375 WP_004466865.1 1977328..1978515(-) (dprA) [Neisseria gonorrhoeae strain WHO_A_2024]
MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSAPAEQVAPAVRHKHALEAWHNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPTVSGMASGIDT
AAHQGALEAEGGTVAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRTVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=937199 V5G15_RS10375 WP_004466865.1 1977328..1978515(-) (dprA) [Neisseria gonorrhoeae strain WHO_A_2024]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCAGTTTCGGCAGCGCGCAAAATGCCTTGTCCGCACCGGCGGAACAGGTTGCCCCGGCGGTGCGGCATAAGCACGCGC
TTGAGGCTTGGCACAATGCGGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCTACCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCGTCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGCCAACAAAAACCTTGCTTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGTTCGATAGACAATCCGCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGCGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCGTCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCACCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCCATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

99.494

100

0.995

  dprA Neisseria gonorrhoeae strain FA1090

99.241

100

0.992

  dprA Neisseria meningitidis strain C311

89.421

100

0.899

  dprA Neisseria meningitidis MC58

89.421

100

0.899

  dprA Vibrio cholerae strain A1552

36.962

100

0.37