Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   V5F91_RS09860 Genome accession   NZ_CP145064
Coordinates   1892016..1893203 (-) Length   395 a.a.
NCBI ID   WP_003694351.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S_2024     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1887016..1898203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F91_RS09835 (V5F91_09865) - 1887321..1888166 (-) 846 WP_353174525.1 opacity family porin -
  V5F91_RS09840 (V5F91_09870) - 1888268..1888812 (-) 545 Protein_1907 IS1595 family transposase -
  V5F91_RS09845 (V5F91_09875) - 1888808..1888930 (-) 123 Protein_1908 phosphomethylpyrimidine synthase ThiC -
  V5F91_RS09850 (V5F91_09880) topA 1889151..1891457 (-) 2307 WP_050154450.1 type I DNA topoisomerase -
  V5F91_RS09855 (V5F91_09885) - 1891529..1891990 (-) 462 WP_003690120.1 DUF494 domain-containing protein -
  V5F91_RS09860 (V5F91_09890) dprA 1892016..1893203 (-) 1188 WP_003694351.1 DNA-processing protein DprA Machinery gene
  V5F91_RS09865 (V5F91_09895) - 1893294..1894571 (-) 1278 WP_003690124.1 sigma-54 dependent transcriptional regulator -
  V5F91_RS09870 (V5F91_09900) - 1894564..1896684 (-) 2121 WP_003690126.1 HAMP domain-containing histidine kinase -
  V5F91_RS09875 (V5F91_09905) - 1896684..1897283 (-) 600 WP_003690290.1 DUF4390 domain-containing protein -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41896.97 Da        Isoelectric Point: 6.3096

>NTDB_id=936770 V5F91_RS09860 WP_003694351.1 1892016..1893203(-) (dprA) [Neisseria gonorrhoeae strain WHO_S_2024]
MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSAPAEQVAPAVRHKHALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPTVSGMASGIDT
AAHQGALEAEGGTVAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRTVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=936770 V5F91_RS09860 WP_003694351.1 1892016..1893203(-) (dprA) [Neisseria gonorrhoeae strain WHO_S_2024]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCAGTTTCGGCAGCGCGCAAAATGCCTTGTCCGCACCGGCGGAACAGGTTGCCCCGGCGGTGCGGCATAAGCACGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCTACCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCGTCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGCCAACAAAAACCTTGCTTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTCATGGCGGTGCCCGGTTCGATAGACAACCCCCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGCGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCGTCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCACCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCCATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

99.747

100

0.997

  dprA Neisseria gonorrhoeae strain FA1090

99.494

100

0.995

  dprA Neisseria meningitidis strain C311

89.673

100

0.901

  dprA Neisseria meningitidis MC58

89.673

100

0.901

  dprA Vibrio cholerae strain A1552

36.962

100

0.37