Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M2084_RS14640 Genome accession   NZ_AP025662
Coordinates   3026285..3026914 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain TUM20902     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3021285..3031914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2084_RS14625 (TUM20902_28050) helD 3021527..3023581 (-) 2055 WP_001305911.1 DNA helicase IV -
  M2084_RS14630 (TUM20902_28060) yccF 3023704..3024150 (+) 447 WP_001261235.1 YccF domain-containing protein -
  M2084_RS14635 (TUM20902_28070) yccS 3024160..3026322 (+) 2163 WP_000875041.1 YccS family putative transporter -
  M2084_RS14640 (TUM20902_28080) sxy/tfoX 3026285..3026914 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  M2084_RS14645 (TUM20902_28090) sulA 3027133..3027642 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  M2084_RS14650 (TUM20902_28110) ompA 3027998..3029038 (+) 1041 WP_001309394.1 porin OmpA -
  M2084_RS14655 (TUM20902_28120) matP 3029114..3029566 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  M2084_RS14660 (TUM20902_28130) ycbZ 3029752..3031512 (+) 1761 WP_000156482.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=93467 M2084_RS14640 WP_000839153.1 3026285..3026914(-) (sxy/tfoX) [Escherichia coli strain TUM20902]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=93467 M2084_RS14640 WP_000839153.1 3026285..3026914(-) (sxy/tfoX) [Escherichia coli strain TUM20902]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment