Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VQP54_RS03125 Genome accession   NZ_CP144682
Coordinates   640594..642396 (-) Length   600 a.a.
NCBI ID   WP_338489485.1    Uniprot ID   -
Organism   Ruoffia tabacinasalis strain jzb001     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 635594..647396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQP54_RS03095 (VQP54_03095) - 636267..637001 (+) 735 WP_338489479.1 hypothetical protein -
  VQP54_RS03100 (VQP54_03100) - 637059..637628 (-) 570 WP_197104751.1 Gx transporter family protein -
  VQP54_RS03110 (VQP54_03110) - 637968..638117 (-) 150 WP_338489481.1 hypothetical protein -
  VQP54_RS03115 (VQP54_03115) - 638153..638959 (-) 807 WP_338489483.1 isocitrate/isopropylmalate family dehydrogenase -
  VQP54_RS03120 (VQP54_03120) - 638993..640309 (-) 1317 Protein_597 citrate:proton symporter -
  VQP54_RS03125 (VQP54_03125) pepF 640594..642396 (-) 1803 WP_338489485.1 oligoendopeptidase F Regulator
  VQP54_RS03130 (VQP54_03130) - 642470..643555 (-) 1086 WP_338489487.1 competence protein CoiA family protein -
  VQP54_RS03135 (VQP54_03135) - 643666..644358 (-) 693 WP_338489489.1 adaptor protein MecA -
  VQP54_RS03140 (VQP54_03140) spxA 644528..644926 (-) 399 WP_197104745.1 transcriptional regulator SpxA -
  VQP54_RS03145 (VQP54_03145) trpS 645303..646288 (+) 986 Protein_602 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68895.44 Da        Isoelectric Point: 4.4097

>NTDB_id=934381 VQP54_RS03125 WP_338489485.1 640594..642396(-) (pepF) [Ruoffia tabacinasalis strain jzb001]
MTESNVKTREQMNATYQWDLTPLFASDEEFESGYAKAENNLDKITAYKGRLGESPEVLSEAIDTLLELGREVSNLGVYAH
LKNDQDQTNPTYQKMNAQTEQLYSKYSQVTSFFRPELLAIPAEQLEEMTANNDRLKELDQFIDDIARNREHVLPPEQELL
LASASEVFGGATRIFGYLNNADFQFPTVKDSEGNDVQLTHGLYGKLLESTDRRVRKDTFEGFYSVYQQFENTLAQTLTTE
IKTHNYNAKVRGFESARAAALFTNNIPESVYDTLLDTVESRLNLLHRYVDLRKSLLNIDDLEMYDMYTPLLGEPPIAFTY
EEAKEITLNALQPLGEEYLEIIRNAFDEQWIDVYENKGKRSGAYSSGTYDSKPYILMNWQDSLNSLYTLVHELGHSAHSY
LTHANQPYEYGSYSIFLAEIASTTNENLLTNYLLRTYDDKDIQRYVLNHFLDGLKGTVFRQTQFAEFEHFIHDQDGNGQP
LTAEFLSENYQKLNAKYYGPSVNSDSEIKNEWSRIPHFYMNYYVFQYATGFAAATAFADRIAAGDKEALNSYLGFLKSGK
SQYAIDTMKTAGLDMTKRDYIEQTLDVFEQRLAEFEALLD

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=934381 VQP54_RS03125 WP_338489485.1 640594..642396(-) (pepF) [Ruoffia tabacinasalis strain jzb001]
ATGACAGAATCAAATGTAAAAACAAGAGAACAAATGAATGCAACATATCAATGGGATTTAACACCATTATTTGCATCCGA
CGAAGAGTTTGAAAGTGGGTACGCTAAAGCTGAAAATAATCTAGATAAGATTACAGCTTACAAAGGCAGATTAGGGGAAA
GCCCAGAAGTGCTTAGTGAAGCTATCGATACGTTATTAGAGTTAGGACGCGAAGTTTCTAACTTAGGTGTGTATGCTCAT
TTGAAAAATGATCAAGATCAAACAAATCCGACATACCAAAAGATGAATGCTCAAACCGAGCAACTATATTCTAAATATAG
TCAAGTGACGTCTTTCTTTAGACCAGAATTACTTGCTATTCCTGCTGAGCAACTAGAAGAAATGACAGCAAACAATGATA
GACTGAAAGAATTAGATCAGTTTATTGACGATATTGCACGTAATCGCGAACACGTTTTACCACCAGAACAAGAATTATTA
CTAGCCAGTGCGAGTGAAGTTTTTGGTGGAGCAACACGTATCTTCGGTTACCTAAATAACGCTGACTTCCAATTCCCAAC
TGTGAAAGATAGCGAAGGTAATGACGTTCAATTGACTCATGGGTTATACGGTAAATTATTAGAAAGTACAGATAGACGCG
TCAGAAAAGATACTTTTGAAGGGTTCTATTCTGTGTATCAACAATTTGAGAATACTTTAGCTCAAACTTTAACAACTGAA
ATTAAGACACATAATTACAATGCAAAAGTTAGAGGGTTTGAATCAGCGAGAGCAGCAGCTTTATTCACTAATAATATTCC
TGAATCTGTCTACGATACATTATTAGACACTGTTGAATCTCGATTAAACTTATTACATCGTTATGTAGACTTACGTAAAT
CATTGTTAAATATCGATGATTTAGAAATGTATGACATGTATACACCATTACTGGGTGAACCTCCAATTGCCTTTACATAT
GAAGAGGCAAAAGAAATTACTTTAAATGCGCTTCAACCATTAGGTGAAGAATACTTAGAAATCATTCGCAATGCGTTTGA
CGAGCAATGGATTGATGTTTATGAGAATAAAGGGAAACGTAGTGGAGCATATTCATCAGGAACATATGACAGCAAACCAT
ATATTCTAATGAACTGGCAAGATAGCCTAAATTCATTATATACACTCGTCCATGAATTAGGACACAGTGCCCACAGTTAC
TTAACCCATGCGAATCAACCGTACGAATACGGTAGCTACTCAATTTTCCTAGCAGAAATCGCATCTACAACAAATGAAAA
CTTACTAACGAATTATTTATTGAGAACTTATGATGATAAAGATATTCAACGCTATGTTCTAAATCATTTCTTAGATGGAT
TAAAAGGAACAGTCTTCCGTCAAACTCAATTCGCAGAATTTGAACACTTTATCCACGATCAAGATGGTAACGGTCAACCA
TTAACAGCTGAGTTTCTGTCAGAAAACTATCAAAAATTAAATGCGAAATATTATGGTCCATCTGTGAATTCTGATTCTGA
AATTAAGAATGAGTGGAGTCGTATCCCTCACTTCTATATGAATTACTACGTATTCCAATATGCGACTGGATTTGCTGCAG
CAACTGCCTTTGCAGATCGTATTGCTGCTGGTGATAAAGAAGCATTAAATAGCTATTTAGGTTTCTTGAAATCAGGTAAA
AGTCAGTATGCCATCGATACGATGAAGACTGCTGGTTTAGATATGACAAAACGTGATTATATCGAACAAACTTTAGATGT
ATTTGAACAAAGATTAGCTGAATTTGAAGCACTATTAGATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-585)

Oligopeptidase F (Peptidase_M3_N)

(116-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.169

98.667

0.495